RetrogeneDB ID: | retro_ggor_833 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:105455601..105456708(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSGGOG00000026747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK |
MDP.KVNEL.AFVKMCKQDPSVLHTEEM.FLREWVES..GKV.PATQKAKSEENTKEEKPDSKKVEEDLK | |
Retrocopy | MDPHKVNELWAFVKMCKQDPSVLHTEEMHFLREWVESIVGKVSPATQKAKSEENTKEEKPDSKKVEEDLK |
Parental | ADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDA |
ADE.SSEESDLEIDKEGVIEPDTDAPQEMGD.NAEI.EEMMDQANDKKVAAIE.LNDGELQKA.DLFTDA | |
Retrocopy | ADETSSEESDLEIDKEGVIEPDTDAPQEMGD*NAEIKEEMMDQANDKKVAAIETLNDGELQKATDLFTDA |
Parental | IKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACK |
IKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQP.KW.GKAHRLLGHWEEAAHDLALACK | |
Retrocopy | IKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPHKWQGKAHRLLGHWEEAAHDLALACK |
Parental | LDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKEKIERVKKAREEHERAQREEEARRQSGAQYGS |
LDYDEDASAMLKEV..RA.KIAEHRRKYERK.EE.EIKE.IERVKKAREEHERAQREEEAR.QSGAQ.GS | |
Retrocopy | LDYDEDASAMLKEVRHRA*KIAEHRRKYERKCEE*EIKERIERVKKAREEHERAQREEEAR*QSGAQCGS |
Parental | FPGGFPGGMPGNFPGGMPGMGGGMPGMAGMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQS |
FPGGFPGGMPGNFP.GMPGMGGG.........LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQS | |
Retrocopy | FPGGFPGGMPGNFPRGMPGMGGGXXXXXXXXXLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQS |
Parental | NPKVMNLISKLSAKFGGQA |
NPKVMNLISKLSAKFGGQA | |
Retrocopy | NPKVMNLISKLSAKFGGQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 76 .73 RPM |
SRP007412_cerebellum | 0 .08 RPM | 58 .94 RPM |
SRP007412_heart | 0 .00 RPM | 17 .86 RPM |
SRP007412_kidney | 0 .33 RPM | 168 .54 RPM |
SRP007412_liver | 0 .21 RPM | 91 .74 RPM |
SRP007412_testis | 0 .62 RPM | 132 .19 RPM |