RetrogeneDB ID: | retro_ggor_277 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:111326166..111326867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSGGOG00000026747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.89 % |
Parental protein coverage: | 63.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | LFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDL |
LFTDAIKLNP.LAIL.AKRASVF.KLQKPNAA..D.DRAIEINPDSAQ.YKW.....RLLG.WEEAAH.L | |
Retrocopy | LFTDAIKLNPHLAILCAKRASVFIKLQKPNAASQDRDRAIEINPDSAQTYKW*ENTLRLLGLWEEAAHAL |
Parental | ALACKLDYDEDASAMLKEVQ-PRAQKIAEHRRKYERKREEREIKEKIERVKKA-REEHERAQREEE-ARR |
ALA.KLDYDEDAS.MLKEVQ.PRA.KI.EH.RKYE.K.EE.EIKE.IERVKKA...E.......EE.ARR | |
Retrocopy | ALAWKLDYDEDASKMLKEVQ>PRA*KIIEHCRKYE*KCEEQEIKERIERVKKA<SQEKHERSQREEEARR |
Parental | QSGAQYGSFPGGFPGGMPGNFPGGMPGMGGGMPGMAGMPGLNEILSD-PEVLAAMQDPEVMVAFQDVAQN |
.S.AQYGSFP.G..G.MPG.F...MPGMGG.M.GMAGMPGL..ILSD.PEVL.AMQ..EVMVAFQDVAQN | |
Retrocopy | *SRAQYGSFPSGLSGRMPGKFLREMPGMGGDMSGMAGMPGL-KILSD<PEVLTAMQGSEVMVAFQDVAQN |
Parental | PANMSKYQSNPKVMNLISKLSAKFGGQA |
PANMSK.QSNPKV.NLISKLSAKFGGQA | |
Retrocopy | PANMSKCQSNPKVKNLISKLSAKFGGQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 76 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 58 .94 RPM |
SRP007412_heart | 0 .00 RPM | 17 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 168 .54 RPM |
SRP007412_liver | 0 .00 RPM | 91 .74 RPM |
SRP007412_testis | 0 .00 RPM | 132 .19 RPM |