RetrogeneDB ID: | retro_pabe_2361 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:146101583..146102669(-) | ||
Located in intron of: | ENSPPYG00000014180 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSPPYG00000011858 | ||
Aliases: | ST13, FAM10A1 | ||
Description: | hsc70-interacting protein [Source:RefSeq peptide;Acc:NP_001127121] |
Percent Identity: | 88.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK |
MDP.KVN.LRAFVKMC.QDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPD.KKVEEDLK | |
Retrocopy | MDPHKVNKLRAFVKMCEQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDIKKVEEDLK |
Parental | ADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDA |
ADEPSSEESDLEIDKEGVIEPDTDAP.E.GDENAEI.EEMMDQANDK.VAAIEALNDGELQKAIDLFTDA | |
Retrocopy | ADEPSSEESDLEIDKEGVIEPDTDAP*ETGDENAEIMEEMMDQANDKEVAAIEALNDGELQKAIDLFTDA |
Parental | IKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACK |
IK.NPRLAILYA.RASVFVKLQKP.AAI.DCD.AIEINPDSAQPYKW.GKAHRLLGHWEEAAHDLALACK | |
Retrocopy | IKPNPRLAILYAMRASVFVKLQKPSAAIQDCDQAIEINPDSAQPYKWWGKAHRLLGHWEEAAHDLALACK |
Parental | LDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQYGS |
LDYDEDASAMLKEVQPRAQKI.E..RKYERKR.ER.IKER.ERVKKA.EEHERAQR.EE..R....Q.G. | |
Retrocopy | LDYDEDASAMLKEVQPRAQKIEEYWRKYERKRKERAIKERLERVKKAQEEHERAQR-EEEARR---QSGA |
Parental | FPGGFPGGMPGNLPGGMPG-MGGGMPGMAGMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQ |
..G.FPGG.....PGGMPG...GGMPGMA.MPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQ | |
Retrocopy | QYGSFPGGF----PGGMPGNFPGGMPGMARMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQ |
Parental | SNPKVMNLISKLSAKFGGQA |
SNPKVMNLISKLSAKFGGQA | |
Retrocopy | SNPKVMNLISKLSAKFGGQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 61 .04 RPM |
SRP007412_cerebellum | 0 .12 RPM | 67 .12 RPM |
SRP007412_heart | 0 .06 RPM | 46 .81 RPM |
SRP007412_kidney | 0 .10 RPM | 110 .84 RPM |
SRP007412_liver | 0 .00 RPM | 56 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2853 |
Gorilla gorilla | retro_ggor_1975 |