RetrogeneDB ID: | retro_mmul_438 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:160142245..160142799(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2953 | ||
Ensembl ID: | ENSMMUG00000019118 | ||
Aliases: | None | ||
Description: | hsc70-interacting protein [Source:RefSeq peptide;Acc:NP_001248251] |
Percent Identity: | 88.77 % |
Parental protein coverage: | 50.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK |
MDP.KVNELRAFVKMCKQDPSVLHT.EMRFLREWVESM.GKVPPATQKA..EENT.EEKPDSKKVEEDLK | |
Retrocopy | MDPHKVNELRAFVKMCKQDPSVLHTKEMRFLREWVESMWGKVPPATQKAIFEENT*EEKPDSKKVEEDLK |
Parental | ADEPSSEESDLEIDKEGVIEPDTDSPQEMGDENAEITEEMMDQANDKKVAAIE-ALNDGELQKAIDLFTD |
ADEPSSEESDLEID.EGVIEPDTD..QEMGDENAEIT.EMMDQANDKKVAA.E.ALNDG.LQKA.DLFTD | |
Retrocopy | ADEPSSEESDLEIDNEGVIEPDTDAHQEMGDENAEIT-EMMDQANDKKVAATE<ALNDGKLQKATDLFTD |
Parental | AIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYK |
AI.LNP.LAIL.AKRASVF.KLQKPNA.IR.CDRAIEINPDSAQP.K | |
Retrocopy | AIRLNPCLAIL*AKRASVFLKLQKPNATIRECDRAIEINPDSAQPDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 68 .35 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 69 .65 RPM |
SRP007412_cerebellum | 0 .00 RPM | 67 .16 RPM |
SRP007412_heart | 0 .00 RPM | 73 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 138 .38 RPM |
SRP007412_liver | 0 .00 RPM | 88 .31 RPM |
SRP007412_testis | 0 .04 RPM | 92 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_500 |