RetrogeneDB ID: | retro_cfam_247 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:16310601..16311748(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSCAFG00000001139 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) (ST13), mRNA. [Source:RefSeq mRNA;Acc:NM_001252418] |
Percent Identity: | 88.11 % |
Parental protein coverage: | 96.18 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | PAARQRLWIMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESM----GGKIPPATHKTKSEDNIKE |
PA..Q..W..DP.KVSELRAFVKMCKQDPSVLHTEEM.FLRE.VESM....GGKIPPATHKTKSEDNIKE | |
Retrocopy | PATCQGPWTLDPCKVSELRAFVKMCKQDPSVLHTEEMCFLRERVESMVKYHGGKIPPATHKTKSEDNIKE |
Parental | EKTDSKKAEENIKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDENVEITEEMMDQANDKK-VAAIDALN |
EKTDSKK.EENIKTDEPS..ESDLE.D.EGVIEPDTDAPQEMGDENVEITEEMMDQAND...VAA.DALN | |
Retrocopy | EKTDSKKEEENIKTDEPSNDESDLEMDKEGVIEPDTDAPQEMGDENVEITEEMMDQANDXXXVAATDALN |
Parental | DGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLG |
.G.LQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKP.AAI.DCDRAIEI.PDSAQPYKW.GKAHRLLG | |
Retrocopy | GGDLQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPSAAI*DCDRAIEIIPDSAQPYKW*GKAHRLLG |
Parental | HWEEAAHDLALACKLDYDEDASAMLKEVQPRAQ-KIAEHRRKYERKREEREIKERIERVKKAREEHERAQ |
HWEEAAHDLALACKLDYDEDASAML.EVQPRAQ.KIA.H.RKYE.K.EE.E.KERIERVKKAREEHERAQ | |
Retrocopy | HWEEAAHDLALACKLDYDEDASAMLNEVQPRAQ>KIAQHWRKYEQKHEE*EVKERIERVKKAREEHERAQ |
Parental | REEEARRQSGAQYGSFPGGFPGGMPSNFPGGMPGMAG-GMPGMAGMPGLNEILSDPEVLAAMQDPEVMVA |
RE.EA..QSGAQYGSF.GGF.GGMPSNFPGGMPGMAG.GMP.MAGMPGLNEI.SDPEVLAAMQDPEVMVA | |
Retrocopy | REGEAKGQSGAQYGSFLGGFLGGMPSNFPGGMPGMAG<GMPEMAGMPGLNEIPSDPEVLAAMQDPEVMVA |
Parental | FQDVA-QNPANMSKYQSNPKVMNLI-SKLSAKFGGQA |
FQDVA.QNPANMSKYQSNPKVMNLI.SKLSAKFGGQA | |
Retrocopy | FQDVA<QNPANMSKYQSNPKVMNLI<SKLSAKFGGQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 76 .27 RPM |
SRP017611_brain | 0 .00 RPM | 54 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 160 .40 RPM |
SRP017611_liver | 0 .00 RPM | 101 .08 RPM |