RetrogeneDB ID: | retro_cpor_961 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_37:18462529..18463602(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSCPOG00000002290 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.03 % |
Parental protein coverage: | 98.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ELRAFVKMCKQDPSVLHTEEMRFLREWVESMG-GKVPPATHKAKSEENIKEEKTDSKKTEENIKTDEPSS |
EL.AF.KMCKQDPS.LHTEEMRFLREWVESMG.G.VPPATHKAKSEENIKEEKTDSKKTEENIKTDEPSS | |
Retrocopy | ELHAFAKMCKQDPSILHTEEMRFLREWVESMG<GRVPPATHKAKSEENIKEEKTDSKKTEENIKTDEPSS |
Parental | EESDLEIDNEGVIEPDTDSPQEMGDENVEITEEMMDQANEKKGAAIDALNDGELQKAIDLFTDAIKLNPR |
EESDLEI.NEGVIEPDTDSPQE.GDENVEITEEMMDQANEKKGAAIDALNDGELQKAIDLFTDAIKLNPR | |
Retrocopy | EESDLEINNEGVIEPDTDSPQEIGDENVEITEEMMDQANEKKGAAIDALNDGELQKAIDLFTDAIKLNPR |
Parental | LAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDED |
LAI.YAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDED | |
Retrocopy | LAIWYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDED |
Parental | ASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHEKAQRMEEEPRRQSGAQYGSFPGGF |
ASAML.EVQ.RAQKIAEH.RKYE.K.EE.EIKERIERVKKAREEHEKAQR.EEE.RR.SGAQYGSFPGGF | |
Retrocopy | ASAMLQEVQLRAQKIAEHQRKYEQKCEE*EIKERIERVKKAREEHEKAQR-EEEARRLSGAQYGSFPGGF |
Parental | PGG---MPGNFPGGMPGMGAGMAGMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVM |
PGG...M.G..PG....MGAGMAGMPGL.EILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVM | |
Retrocopy | PGGCLVMSGGMPG----MGAGMAGMPGLHEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVM |
Parental | NLISKLSAKFGGQA |
NLI.KLSAKFGGQA | |
Retrocopy | NLIRKLSAKFGGQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .80 RPM | 83 .69 RPM |
SRP017611_kidney | 8 .48 RPM | 185 .09 RPM |
SRP017611_liver | 7 .44 RPM | 179 .64 RPM |
SRP040447_lung | 2 .45 RPM | 85 .22 RPM |
SRP040447_skeletal_muscle | 2 .75 RPM | 103 .25 RPM |