Parental gene:

ST13, ENSCAFG00000001139

Aliases:None
Description:Canis lupus familiaris suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) (ST13), mRNA. [Source:RefSeq mRNA;Acc:NM_001252418]
Organism:Dog (Canis familiaris)
Coordinates:10:24379996..24411766(+)


>ENSCAFG00000001139
AGTACCCGCGCCTGGAATCGGGCCGCAGCCTCGCCGCGCCTGCCGCCCGCCGCCCGCCAGCGCCTCTGGATCATGGACCC
CCGCAAAGTGAGCGAGCTTCGGGCCTTCGTGAAAATGTGTAAACAGGATCCGAGCGTTCTGCACACCGAGGAAATGCGTT
TCCTGCGGGAGTGGGTGGAGAGCATGGGGGGTAAAATACCACCTGCTACTCATAAAACTAAATCAGAAGACAATATCAAG
GAAGAAAAAACAGATAGTAAGAAGGCGGAGGAAAACATAAAGACAGACGAACCATCAAGTGAGGAAAGTGATCTAGAAAT
TGACAATGAAGGTGTAATTGAACCAGATACTGATGCTCCTCAAGAAATGGGAGATGAAAATGTAGAGATAACCGAGGAAA
TGATGGATCAGGCAAATGATAAAAAAGTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTTG
TTCACAGATGCCATCAAACTAAATCCTCGCTTAGCCATTTTGTATGCCAAGAGAGCCAGTGTCTTCATCAAATTACAGAA
GCCAAATGCTGCCATTCGAGACTGTGACAGAGCTATCGAAATAAATCCTGATTCAGCGCAGCCTTACAAGTGGCGAGGGA
AAGCACACAGACTTCTGGGTCATTGGGAGGAAGCAGCACATGATCTTGCCCTTGCTTGTAAACTGGATTATGATGAAGAT
GCTAGTGCAATGCTGAAAGAAGTTCAACCCAGGGCCCAGAAAATTGCTGAACATCGGAGGAAGTATGAACGAAAACGTGA
AGAGCGAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCGGGAAGAACATGAAAGAGCCCAGAGGGAGGAAGAAG
CCAGACGACAATCAGGAGCTCAGTATGGCTCTTTCCCAGGTGGCTTTCCAGGGGGAATGCCTAGTAATTTTCCTGGAGGA
ATGCCTGGAATGGCAGGGGGGATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAGTGACCCAGAGGTTCT
TGCAGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTAGCCCAGAACCCAGCAAATATGTCAAAATATCAGA
GCAACCCAAAGGTTATGAATCTCATCAGTAAATTGTCAGCCAAATTTGGAGGTCAAGCATAA

Library Parental gene expression (RPM)
SRP017611_brain 54 .86 RPM
SRP017611_kidney 160 .40 RPM
SRP017611_liver 101 .08 RPM
SRP012049_cerebellum 76 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005227 possible_ortholog 1 retrogene
retro_acar_2,
Ailuropoda melanoleuca ENSAMEG00000013880 ortholog_one2one 1 retrogene
retro_amel_135,
Bos taurus ENSBTAG00000006202 ortholog_one2many 4 retrogenes
retro_btau_254, retro_btau_427, retro_btau_621, retro_btau_658,
Choloepus hoffmanni ENSCHOG00000012676 ortholog_one2many 1 retrogene
retro_chof_2222,
Callithrix jacchus ENSCJAG00000004644 possible_ortholog 11 retrogenes
retro_cjac_1843, retro_cjac_1953, retro_cjac_2177, retro_cjac_2275, retro_cjac_2789, retro_cjac_3123, retro_cjac_3570, retro_cjac_4019, retro_cjac_488, retro_cjac_640, retro_cjac_685,
Cavia porcellus ENSCPOG00000002290 possible_ortholog 4 retrogenes
retro_cpor_1394, retro_cpor_1477, retro_cpor_166, retro_cpor_961,
Felis catus ENSFCAG00000011847 ortholog_one2one 2 retrogenes
retro_fcat_920, retro_fcat_987,
Homo sapiens ENSG00000100380 possible_ortholog 16 retrogenes
retro_hsap_1055, retro_hsap_1203, retro_hsap_178, retro_hsap_201, retro_hsap_2078, retro_hsap_2189, retro_hsap_2853, retro_hsap_3206, retro_hsap_3907, retro_hsap_4009, retro_hsap_4876, retro_hsap_500, retro_hsap_619, retro_hsap_756, retro_hsap_812, retro_hsap_986,
Gorilla gorilla ENSGGOG00000026747 possible_ortholog 16 retrogenes
retro_ggor_1600, retro_ggor_1734, retro_ggor_1791, retro_ggor_1975, retro_ggor_2177, retro_ggor_2634, retro_ggor_2692, retro_ggor_277, retro_ggor_3045, retro_ggor_629, retro_ggor_666, retro_ggor_749, retro_ggor_788, retro_ggor_832, retro_ggor_833, retro_ggor_938,
Microcebus murinus ENSMICG00000008875 possible_ortholog 2 retrogenes
retro_mmur_481, retro_mmur_954,
Myotis lucifugus ENSMLUG00000007764 possible_ortholog 2 retrogenes
retro_mluc_1088, retro_mluc_2021,
Macaca mulatta ENSMMUG00000019118 possible_ortholog 3 retrogenes
retro_mmul_1842, retro_mmul_402, retro_mmul_438,
Monodelphis domestica ENSMODG00000013042 ortholog_many2many 2 retrogenes
retro_mdom_1087, retro_mdom_31,
Mustela putorius furo ENSMPUG00000016432 ortholog_one2one 15 retrogenes
retro_mputfur_1640, retro_mputfur_211, retro_mputfur_212, retro_mputfur_233, retro_mputfur_272, retro_mputfur_282, retro_mputfur_289, retro_mputfur_343, retro_mputfur_373, retro_mputfur_379, retro_mputfur_402, retro_mputfur_450, retro_mputfur_506, retro_mputfur_605, retro_mputfur_778,
Mus musculus ENSMUSG00000022403 possible_ortholog 2 retrogenes
retro_mmus_2997, retro_mmus_651,
Nomascus leucogenys ENSNLEG00000015378 possible_ortholog 17 retrogenes
retro_nleu_1142, retro_nleu_1155, retro_nleu_1606, retro_nleu_1852, retro_nleu_2075, retro_nleu_2088, retro_nleu_2376, retro_nleu_2404, retro_nleu_247, retro_nleu_2555, retro_nleu_2765, retro_nleu_3121, retro_nleu_3122, retro_nleu_319, retro_nleu_447, retro_nleu_552, retro_nleu_988,
Otolemur garnettii ENSOGAG00000016932 ortholog_many2many 1 retrogene
retro_ogar_224,
Pongo abelii ENSPPYG00000011858 possible_ortholog 14 retrogenes
retro_pabe_1004, retro_pabe_2181, retro_pabe_2361, retro_pabe_2657, retro_pabe_2885, retro_pabe_3183, retro_pabe_3673, retro_pabe_3794, retro_pabe_437, retro_pabe_554, retro_pabe_727, retro_pabe_763, retro_pabe_798, retro_pabe_880,
Pelodiscus sinensis ENSPSIG00000004553 possible_ortholog 1 retrogene
retro_psin_42,
Pteropus vampyrus ENSPVAG00000011908 possible_ortholog 2 retrogenes
retro_pvam_1104, retro_pvam_393,
Rattus norvegicus ENSRNOG00000019070 possible_ortholog 8 retrogenes
retro_rnor_1360, retro_rnor_1725, retro_rnor_1798, retro_rnor_1976, retro_rnor_2204, retro_rnor_2372, retro_rnor_2481, retro_rnor_2543,
Sarcophilus harrisii ENSSHAG00000000319 ortholog_many2many 2 retrogenes
retro_shar_70, retro_shar_767,
Sus scrofa ENSSSCG00000000071 possible_ortholog 1 retrogene
retro_sscr_428,
Ictidomys tridecemlineatus ENSSTOG00000003165 possible_ortholog 1 retrogene
retro_itri_88,
Tursiops truncatus ENSTTRG00000011510 ortholog_one2one 5 retrogenes
retro_ttru_1245, retro_ttru_1425, retro_ttru_1615, retro_ttru_385, retro_ttru_670,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_247 88.11 96.18
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2. retro_cfam_262 98.69 97.20
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3. retro_cfam_582 77.13 63.87
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4. retro_cfam_808 98.73 100.00
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5. retro_cfam_901 92.95 79.13
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6. retro_cfam_969 71.57 76.34
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7. retro_cfam_1029 87.20 94.40
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8. retro_cfam_1101 86.72 63.61
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9. retro_cfam_1122 94.43 100.00
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10. retro_cfam_1239 98.65 94.15
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11. retro_cfam_1467 86.84 98.98
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12. retro_cfam_1830 79.87 78.88
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13. retro_cfam_1950 89.34 62.09
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14. retro_cfam_1958 72.56 53.44
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Download FASTA sequences of all ENSCAFG00000001139 retrocopies