RetrogeneDB ID:

retro_ggor_1975

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:3:143848752..143849848(-)
Located in intron of:ENSGGOG00000034866
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ST13
Ensembl ID:ENSGGOG00000026747
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1975
ATGGACCCCCGCAAAGTGAACAAGCTTCGGGCCTTTGTGAAAATGTGTAAGGAGGATCCGAGCGTTCTGCACACCGAGGA
AATGCACTTCCTGAGGGAGTGGGTGGAGAGCATGGGAGGTAAAGTACCACCTGCTACTCAGAAAGCTAAATCAGAAGAAA
ATACCAAGGAAGAAAAACCTGACAGTAAGAAGGTGGAGGAAGACTTACAGGCAGAAGAACCATCAAGTGAAGAAAGTGAT
CTAGAAATTGATAAAGAAGGTGTGATTGAACCAGACACTGATGCTCCTTAAGAAATGGGAGATGAAAATGCGGAGATAAC
GGAGGAGATGATGGATCAGGCAAATGATAAAAAAGTGGCTGCTATTGAAGCCCTAAACGATGGTGAACTCCAGAAAGCCA
TTGACTTATTCACAGATGCCATCAAGCTGAATCCTGGCTTGGCCATTTTGTATGCCAAGAGGGCCAGTGTCTTCGTCAAA
TTACAGAAGCCAAGTGCTGCCATCCAAGACTGTGACAGAGCCATTGAAATAAATCCTGATTCAGCTCAGCCTTACAAGTG
GCGGGCGAAAGCACACAGACTTCTAGGCCACTGGGAAGAAGCAGCCCATGATCTTGCCCTTGCCTGTAAATTGGATTATG
ATGAAGATGCTAGTGCAATGCTGAAAGAAGTTCAACCTAGGGCACAGAAAATTGGAGAACATCGGAGAAAGTATGAGCGA
AAACGTGAAGAGCGAGAGATCAAAGAAAGAACAGAACGAGTTAAGAAGGCTCAAGAAGAGCATGAGAGAGCCCAGAGGGA
GGAAGAAGCCAGATGACAGTCAAGGCTCTTTTCCAAGTGGCTTTCCTGGGAGAATGCCTGGTAATTTTCCTGGAGGAATG
CCTGGAATGGGAGGGGGCATGACTGGAATGGCTGGAATGCCTGGACTCAATGAAATTCTTAGTGATCCAGAGGTTCTTGC
CGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTGGCTCAGAACCCAGCAAATATGTCAAAATAGCAGAACA
ACCCAAAGGTTATGAATCTCATCAGTAAATTGTCAGCCAAATTTGGAGGTCAAGCG

ORF - retro_ggor_1975 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.73 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK
MDPRKVN.LRAFVKMCK.DPSVLHTEEM.FLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDL.
RetrocopyMDPRKVNKLRAFVKMCKEDPSVLHTEEMHFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLQ
ParentalADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDA
A.EPSSEESDLEIDKEGVIEPDTDAP.EMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDA
RetrocopyAEEPSSEESDLEIDKEGVIEPDTDAP*EMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDA
ParentalIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACK
IKLNP.LAILYAKRASVFVKLQKP.AAI.DCDRAIEINPDSAQPYKWR.KAHRLLGHWEEAAHDLALACK
RetrocopyIKLNPGLAILYAKRASVFVKLQKPSAAIQDCDRAIEINPDSAQPYKWRAKAHRLLGHWEEAAHDLALACK
ParentalLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKEKIERVKKAREEHERAQREEEARRQS-GAQYG
LDYDEDASAMLKEVQPRAQKI.EHRRKYERKREEREIKE..ERVKKA.EEHERAQREEEAR.QS.G....
RetrocopyLDYDEDASAMLKEVQPRAQKIGEHRRKYERKREEREIKERTERVKKAQEEHERAQREEEAR*QS>GSFPS
ParentalSFPGGFPGGMPGNFPGGMPGMGGGMPGMAGMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQ
.FPG..PG....NFPGGMPGMGGG.........LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSK.Q
RetrocopyGFPGRMPG----NFPGGMPGMGGGXXXXXXXXXLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSK*Q
ParentalSNPKVMNLISKLSAKFGGQA
.NPKVMNLISKLSAKFGGQA
RetrocopyNNPKVMNLISKLSAKFGGQA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 76 .73 RPM
SRP007412_cerebellum 0 .08 RPM 58 .94 RPM
SRP007412_heart 0 .06 RPM 17 .86 RPM
SRP007412_kidney 0 .04 RPM 168 .54 RPM
SRP007412_liver 0 .00 RPM 91 .74 RPM
SRP007412_testis 0 .00 RPM 132 .19 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1975 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1975 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2853
Pongo abelii retro_pabe_2361

Parental genes homology:
Parental genes homology involve 26 parental genes, and 148 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000052271 retrocopy
Ailuropoda melanoleuca ENSAMEG000000138801 retrocopy
Bos taurus ENSBTAG000000062024 retrocopies
Canis familiaris ENSCAFG0000000113914 retrocopies
Choloepus hoffmanni ENSCHOG000000126761 retrocopy
Callithrix jacchus ENSCJAG0000000464411 retrocopies
Cavia porcellus ENSCPOG000000022904 retrocopies
Felis catus ENSFCAG000000118472 retrocopies
Homo sapiens ENSG0000010038016 retrocopies
Gorilla gorilla ENSGGOG00000026747 16 retrocopies
Microcebus murinus ENSMICG000000088752 retrocopies
Myotis lucifugus ENSMLUG000000077642 retrocopies
Macaca mulatta ENSMMUG000000191183 retrocopies
Monodelphis domestica ENSMODG000000130422 retrocopies
Mustela putorius furoENSMPUG0000001643215 retrocopies
Mus musculus ENSMUSG000000224032 retrocopies
Nomascus leucogenys ENSNLEG0000001537817 retrocopies
Otolemur garnettii ENSOGAG000000169321 retrocopy
Pongo abelii ENSPPYG0000001185814 retrocopies
Pelodiscus sinensis ENSPSIG000000045531 retrocopy
Pteropus vampyrus ENSPVAG000000119082 retrocopies
Rattus norvegicus ENSRNOG000000190708 retrocopies
Sarcophilus harrisii ENSSHAG000000003192 retrocopies
Sus scrofa ENSSSCG000000000711 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000031651 retrocopy
Tursiops truncatus ENSTTRG000000115105 retrocopies



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