RetrogeneDB ID: | retro_acar_2 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343345.1:212805..213594(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000012607 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000005227 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.94 % |
Parental protein coverage: | 54.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEPPKPTEPESEESDLDIDNEGVIEPDNDEPQAMGDENVEVTEEMMDQANEKKMEAINALSEGELQKAID |
EE........S.ESDL.ID..GVI.PD.D.PQ.MG.E...VT.EM...A..K..EA..AL..G.LQ.AID | |
Retrocopy | EEEKLSEQHTSDESDLEIDEDGVIKPDEDDPQEMGNEDLDVTNEMQGKADQKTEEARSALEAGNLQNAID |
Parental | LFTEAIKLNPHLAILYAKRASVFVKMQKPNAAIRDCDRAIQINPDSAQPYKWRGKAHRRLLGHWEEAAHD |
L.TEAIKLNPH...LY..RAS.F.KMQKPNAAIRDC..A...NPD.AQ.YKWRGKAH..LLGHWEEAA.D | |
Retrocopy | LLTEAIKLNPHSSTLYINRASTFIKMQKPNAAIRDCNKASELNPDDAQAYKWRGKAH-MLLGHWEEAAED |
Parental | LALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEKEI---RERMERVKKAREEHERAQREE |
LALAC..DYDE.....LKEVQP.A.K..EH..KY.RKR..K.I..........K...EE.E..QREE | |
Retrocopy | LALACIWDYDEETNVLLKEVQPKALKMIEHHTKYKRKRTLKKIQKIQDTLDWIKSILEEQEKTQREE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .92 RPM | 115 .89 RPM |
SRP009831_brain | 0 .00 RPM | 153 .86 RPM |
SRP009831_dewlap | 0 .00 RPM | 97 .41 RPM |
SRP009831_embryo | 0 .03 RPM | 317 .37 RPM |
SRP009831_heart | 0 .99 RPM | 130 .69 RPM |
SRP009831_liver | 0 .00 RPM | 196 .17 RPM |
SRP009831_lung | 0 .00 RPM | 167 .24 RPM |
SRP009831_ovary | 0 .00 RPM | 76 .21 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 112 .87 RPM |