RetrogeneDB ID: | retro_cfam_1958 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:41705613..41706247(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSCAFG00000001139 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) (ST13), mRNA. [Source:RefSeq mRNA;Acc:NM_001252418] |
Percent Identity: | 72.56 % |
Parental protein coverage: | 53.44 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | VAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWR |
VA..D.LNDGELQKAI..FTDA.KLNP.LAILYAKRASVFIKLQKPNAAI.D.DR.IE.NPDSA..YKWR | |
Retrocopy | VAVTDVLNDGELQKAINWFTDATKLNPCLAILYAKRASVFIKLQKPNAAI*DYDRPIEMNPDSA*SYKWR |
Parental | GKAHRLL-GHWEEAAHDLALACKLDYDEDASAMLKEV-QPRAQKIAEHRRKYERKREEREIKERIER-VK |
GKAHRLL.G.WEEAAHDLALA.KLDYDEDASAMLKEV.Q.RAQKIA.H.RKYERKREE.EIKERIE...K | |
Retrocopy | GKAHRLL<GLWEEAAHDLALA*KLDYDEDASAMLKEV>QLRAQKIADHWRKYERKREE*EIKERIES>KK |
Parental | KAREEHERAQREEEARRQSGAQYGSFPGGFPGGMPSNFPGGMPGMAG--GMPGMAGMPGLNEILSDPEVL |
...E.......E.EAR.QSGAQYGSFPG.FPGGMP.NFPG.MP.MAG..G.......P.......DPEV. | |
Retrocopy | AREEHERAQREE-EARQQSGAQYGSFPGSFPGGMPRNFPGRMPEMAGMLGLNEILSDPKVVAAMQDPEVT |
Parental | AAMQD |
.A.QD | |
Retrocopy | VAFQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 76 .27 RPM |
SRP017611_brain | 0 .00 RPM | 54 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 160 .40 RPM |
SRP017611_liver | 0 .00 RPM | 101 .08 RPM |