RetrogeneDB ID: | retro_sara_463 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_217575:1754..2131(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1B2 | ||
Ensembl ID: | ENSSARG00000001524 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 beta 2 [Source:HGNC Symbol;Acc:3208] |
Percent Identity: | 79.53 % |
Parental protein coverage: | 97.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLYHALRWYNHIKSFEKEKASLPG |
GFGDLKSP.GLQ.LN.YL.D.SYIE.YVP.QA.VAVFEAVSGPP.ADLY.ALRWYNHIKSFEKEKASLPG | |
Retrocopy | GFGDLKSPPGLQALNSYLVDRSYIERYVPPQAYVAVFEAVSGPPSADLYLALRWYNHIKSFEKEKASLPG |
Parental | VKKALGKYGPANVEDTTGSGAG-DSKDDDD-IDLFGSDDEEESEAKKLREERLAQYK |
VKKALGKYG.ANVE.T.GSG.G..SK.DDD.IDLFGSDD.E..EA.KL.EE.L.QY. | |
Retrocopy | VKKALGKYGHANVENTMGSGSG<GSKGDDDNIDLFGSDDGESEEA*KLKEEHLVQYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |