RetrogeneDB ID: | retro_pabe_2419 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3_random:15952688..15953148(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1B2 | ||
Ensembl ID: | ENSPPYG00000013107 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 beta 2 [Source:HGNC Symbol;Acc:3208] |
Percent Identity: | 76.13 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | GVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYES-KKAKKPALVAK |
GVKK.LGKYGPA.VEDTTGS.A..SKDDDDIDL.GSD.EEESE.AKRL.EE.LA..ES..K.K...L... | |
Retrocopy | GVKKPLGKYGPANVEDTTGSRAANSKDDDDIDLLGSDKEEESEAAKRLMEEWLA*NES>RKPKNVHLLP- |
Parental | SSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITA |
.SI.LD.KPWDD..DMAKLEECVRSIQADGLV.GSSKLV..GYGI.K.QIQCV.EDDKVGTDMLEEQ.TA | |
Retrocopy | FSIILDMKPWDDVADMAKLEECVRSIQADGLV*GSSKLVLMGYGI*KRQIQCVIEDDKVGTDMLEEQVTA |
Parental | FEDYVQSMDVAAFNK |
FED.V.SMD.AAF.K | |
Retrocopy | FEDSV*SMDMAAFHK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 68 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .45 RPM |
SRP007412_heart | 0 .00 RPM | 103 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 128 .28 RPM |
SRP007412_liver | 0 .00 RPM | 234 .81 RPM |