RetrogeneDB ID: | retro_olat_16 | ||
Retrocopylocation | Organism: | Medaka (Oryzias latipes) | |
Coordinates: | 13:18141507..18142155(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSORLG00000009058 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EF1-BETA | ||
Ensembl ID: | ENSORLG00000018533 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.09 % |
Parental protein coverage: | 58.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASKDEDDDDIDLFGS-DEEEDTEAAKLKEQRLAEYAAKKAKKPALIAKSSILLDVKPWDDETDMAKLEEC |
.S....D.DIDLFGS.DE.E..E.A..KEQRLAEYAAKK.KKPALIAKSSILLDVKPWDDETDM.KLEEC | |
Retrocopy | SSEHTSDEDIDLFGSEDEAESAETARIKEQRLAEYAAKKSKKPALIAKSSILLDVKPWDDETDMSKLEEC |
Parental | VRSIQMDGLVWGQSKLVPVGYGIKKLQISCVVEDDKVGTDILEEQITAFEDYVQSMDVAAFNKI |
VRS..MDGL.WGQSKL.PVGYGIKKLQI.CVVEDDKVGTD.LEE.ITAFE.YVQS.DVAAFNKI | |
Retrocopy | VRSVRMDGLLWGQSKLLPVGYGIKKLQIACVVEDDKVGTDVLEEAITAFEEYVQSVDVAAFNKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |