RetrogeneDB ID:

retro_mluc_1857

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429931:1736354..1736783(+)
Located in intron of:ENSMLUG00000003368
Retrocopy
information
Ensembl ID:ENSMLUG00000030573
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000016602
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1857
CACATCAAGTCTTATGAAAAGGAGAAAGCCAGCCTGCCCGGAGTGAAGAAAGCTTTGGGCAAGTATAGCCCTGCTAATGT
GGAAGACACCACAGGAAGTGGAGTTACCGACAGAAAAGATGACGACTACGACATTGACCTCTTTGGATCTGACGATGAGG
AGGAAATCGAAGAAGCAAAGAGGCTAAGAGAAGAACGCCTTGCACAGTATGAATCAAAGAAAGCCAAAAAATCTGCACTT
GTTGCCAAGTCTTCCATCTTGTTAGATGTGAAACCTTGGGATGATGAGACAGATATGGCAAAATTAGAGGAGTGTGTCAG
GAGCATTCAAGCAGATGGCTTGGTCTGTGGCTCTTCTAAACTGGTTCCAGTGGCATATGGAATTAAAAAGCTTCAAATAC
AGTGTGTAGTGGAAGACGATAAAGTTGGA

ORF - retro_mluc_1857 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.71 %
Parental protein coverage: 63.27 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalHIKSYEKEKASLPGVKKALGKYGPANVEDTTGSGAGDSKDDDDDIDLFGSDDEEESEEAKRLREERLAQY
HIKSYEKEKASLPGVKKALGKY.PANVEDTTGSG..D.KDDD.DIDLFGSDDEEE.EEAKRLREERLAQY
RetrocopyHIKSYEKEKASLPGVKKALGKYSPANVEDTTGSGVTDRKDDDYDIDLFGSDDEEEIEEAKRLREERLAQY
ParentalESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD
ESKKAKK.ALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLV.GSSKLVPV.YGIKKLQIQCVVEDD
RetrocopyESKKAKKSALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVCGSSKLVPVAYGIKKLQIQCVVEDD
ParentalKVG
KVG
RetrocopyKVG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1857 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 29 parental genes, and 106 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000030151 retrocopy
Bos taurus ENSBTAG000000219798 retrocopies
Canis familiaris ENSCAFG000000296351 retrocopy
Choloepus hoffmanni ENSCHOG000000138351 retrocopy
Callithrix jacchus ENSCJAG000000058052 retrocopies
Cavia porcellus ENSCPOG000000144964 retrocopies
Dipodomys ordii ENSDORG000000036692 retrocopies
Felis catus ENSFCAG000000102391 retrocopy
Homo sapiens ENSG000001149429 retrocopies
Gorilla gorilla ENSGGOG000000070022 retrocopies
Macropus eugenii ENSMEUG000000026548 retrocopies
Microcebus murinus ENSMICG000000106073 retrocopies
Myotis lucifugus ENSMLUG00000016602 8 retrocopies
Macaca mulatta ENSMMUG000000010546 retrocopies
Nomascus leucogenys ENSNLEG000000070988 retrocopies
Oryctolagus cuniculus ENSOCUG000000098484 retrocopies
Otolemur garnettii ENSOGAG000000112293 retrocopies
Oreochromis niloticus ENSONIG000000176301 retrocopy
Ochotona princeps ENSOPRG000000171633 retrocopies
Oryzias latipes ENSORLG000000185331 retrocopy
Procavia capensis ENSPCAG000000133481 retrocopy
Pongo abelii ENSPPYG000000131077 retrocopies
Pteropus vampyrus ENSPVAG000000173342 retrocopies
Sorex araneus ENSSARG000000015241 retrocopy
Sarcophilus harrisii ENSSHAG000000178531 retrocopy
Sus scrofa ENSSSCG000000161281 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000054373 retrocopies
Tupaia belangeri ENSTBEG0000000565713 retrocopies
Xiphophorus maculatus ENSXMAG000000060501 retrocopy



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