RetrogeneDB ID:

retro_ggor_134

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:X:25090369..25091047(-)
Located in intron of:ENSGGOG00000016072
Retrocopy
information
Ensembl ID:ENSGGOG00000022441
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSGGOG00000007002
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_134
ATGGGTTTCGGAGACCTGAAAAGCCCCGCCGGCCTCCAGGTGCTCAACGATTACCTGGCGGACAAGAGCTACATCAAGGG
GTATGTGCCATCACAAGCAGATGTGGCAGTATTTGAAGCCGTGTCCAGCCCACCGCCTGCCGACTTGTGTCATGCCCTAC
GTTGGTATAATCACATCAAGTCTTACGAAAAGGAAAAGGCCAGCCTGCCAGGAGTGAAGAAAGCTTTGGGCAAGTATGGT
CCTGCCGATGTGGAAGACACTACAGGAAGTGGAGCTACAGATAGTAAAGATGATGATGACATTGACCTCTTTGGATCTGA
TGATGAGGAGGAAAGTGAAGAAGCAAAGAGGCTAAGGGAAGAACGTCTTGCACAATATGAATCAAAGAAAGCCAAAAAAC
CTGCACTTGTTGCCAAGTCTTCCATCTTACTAGATGTGAAACCTTGGGATGATGAGACAGATATGGCGAAATTAGAGGAG
CGCGTCAGAAGCATTCAAGCAGACGGCTTAGTCTGGGGCTCATCTAAACTAGTTCCAGTGGGATACGGAATTAAGAAACT
TCAAATACAGTGTGTAGTTGAAGATGATAAAGTCGGAACAGATATGCTGGAGGAGCAGATCACTGCTTTTGAGGACTATG
TGCAGTCCATGGATGTGGCTGCTTTCAACAAGATCTAA

ORF - retro_ggor_134 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLP
MGFGDLKSPAGLQVLNDYLADKSYI.GYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLP
RetrocopyMGFGDLKSPAGLQVLNDYLADKSYIKGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLP
ParentalGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKS
GVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKS
RetrocopyGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKS
ParentalSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAF
SILLDVKPWDDETDMAKLEE.VRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAF
RetrocopySILLDVKPWDDETDMAKLEERVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAF
ParentalEDYVQSMDVAAFNKI
EDYVQSMDVAAFNKI
RetrocopyEDYVQSMDVAAFNKI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .24 RPM 67 .28 RPM
SRP007412_cerebellum 0 .24 RPM 60 .56 RPM
SRP007412_heart 0 .28 RPM 44 .18 RPM
SRP007412_kidney 0 .29 RPM 162 .00 RPM
SRP007412_liver 0 .53 RPM 153 .78 RPM
SRP007412_testis 0 .31 RPM 119 .24 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_134 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_134 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4795

Parental genes homology:
Parental genes homology involve 29 parental genes, and 106 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000030151 retrocopy
Bos taurus ENSBTAG000000219798 retrocopies
Canis familiaris ENSCAFG000000296351 retrocopy
Choloepus hoffmanni ENSCHOG000000138351 retrocopy
Callithrix jacchus ENSCJAG000000058052 retrocopies
Cavia porcellus ENSCPOG000000144964 retrocopies
Dipodomys ordii ENSDORG000000036692 retrocopies
Felis catus ENSFCAG000000102391 retrocopy
Homo sapiens ENSG000001149429 retrocopies
Gorilla gorilla ENSGGOG00000007002 2 retrocopies
retro_ggor_134 , retro_ggor_2000,
Macropus eugenii ENSMEUG000000026548 retrocopies
Microcebus murinus ENSMICG000000106073 retrocopies
Myotis lucifugus ENSMLUG000000166028 retrocopies
Macaca mulatta ENSMMUG000000010546 retrocopies
Nomascus leucogenys ENSNLEG000000070988 retrocopies
Oryctolagus cuniculus ENSOCUG000000098484 retrocopies
Otolemur garnettii ENSOGAG000000112293 retrocopies
Oreochromis niloticus ENSONIG000000176301 retrocopy
Ochotona princeps ENSOPRG000000171633 retrocopies
Oryzias latipes ENSORLG000000185331 retrocopy
Procavia capensis ENSPCAG000000133481 retrocopy
Pongo abelii ENSPPYG000000131077 retrocopies
Pteropus vampyrus ENSPVAG000000173342 retrocopies
Sorex araneus ENSSARG000000015241 retrocopy
Sarcophilus harrisii ENSSHAG000000178531 retrocopy
Sus scrofa ENSSSCG000000161281 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000054373 retrocopies
Tupaia belangeri ENSTBEG0000000565713 retrocopies
Xiphophorus maculatus ENSXMAG000000060501 retrocopy



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