RetrogeneDB ID: | retro_itri_1263 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393418.1:1284676..1285128(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000005437 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.66 % |
Parental protein coverage: | 67.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIKSYEKEKASLP |
MGF.DL.SPAG.Q.LNDY..DKSYI.GYVP.QADVAVFE.VSG.PPADLCHAL..YNHIKSYEKEKASLP | |
Retrocopy | MGF*DLESPAGFQMLNDYVVDKSYIKGYVPLQADVAVFESVSGRPPADLCHALCRYNHIKSYEKEKASLP |
Parental | GVKKALGKYGPANVEDTTGSGATDSKDDDDIDLFG-SDDEEESEEAKKLREERLAQYESKKAKKPALVAK |
GVKKALGKYGPA.VEDTTGSGAT..KDDD.I.LF..SD..EESEEAK.LREE.LAQYESKKAKKPALVA. | |
Retrocopy | GVKKALGKYGPAKVEDTTGSGATEKKDDDAIHLFY<SDE-EESEEAKGLREECLAQYESKKAKKPALVAM |
Parental | SSILLDVKPWDDE |
SSILLDVK.WDDE | |
Retrocopy | SSILLDVKLWDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |