RetrogeneDB ID: | retro_itri_873 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393336.1:1158948..1159371(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000005437 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.54 % |
Parental protein coverage: | 62.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGK |
P....VL.DYLA.KSYIEGY.PSQAD..VF..V..P..ADLCHALRWYNHI.S.EK......GVK.ALGK | |
Retrocopy | PSWPLVLIDYLASKSYIEGYMPSQADGRVFKEVPRPLSADLCHALRWYNHIISHEKVQVNSSGVKTALGK |
Parental | YGPANVEDTTGSGATD-SKDDDDIDLFGSDDEEES-EEAKKLR-EERLAQYESKKAKKPALVAKSSILLD |
...ANVEDTTGS...D..KD..DI.LF.SDDEE.S..EAK.LR.E..L..Y..KK..KPAL....SI..D | |
Retrocopy | LWHANVEDTTGSVTMD>GKDKGDIELFISDDEEKS>KEAKRLR>ENALHSYDLKKDRKPALA*QYSIIPD |
Parental | VKP |
VKP | |
Retrocopy | VKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |