RetrogeneDB ID: | retro_itri_813 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393327.1:677466..678004(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000005437 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.34 % |
Parental protein coverage: | 81.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVA-VFEAVSGPPPADLCHALRWYNHIKSYE-KEKAS- |
GFGD.K..A.LQ.L...LADK.Y.EG.VP..AD...VFEAVS.P.P.D..H.L..Y.HIK..E.K.K... | |
Retrocopy | GFGDMKNLASLQLLSISLADKRYMEG*VPLRADMG>VFEAVSSPSPVDFFHGLHQYKHIKTCE<KGKGQP |
Parental | LPGVKKALGKYGPANVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKKLREERLAQYESKKAKK-PALV |
.P.VKKALGK.G..N..D....G.TDS.DD.D..LFGS.D...S.....L.EE.L.Q..SK.AKK...L. | |
Retrocopy | FPFVKKALGKCGSTNTDDIR-CGTTDSRDDEDTGLFGSEDKQRS---RRLKEECLVQNQSKIAKK>SILL |
Parental | AKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI |
AKSS..LDVK..DD..DMAKLE..........L..G..KL..VGY.. | |
Retrocopy | AKSSLSLDVKHRDDDIDMAKLEVYQKHSKRE-LGLGLLKLLLVGYEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |