RetrogeneDB ID: | retro_ggor_2000 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:176147657..176148325(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSGGOG00000007002 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76. % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEK-EKASL |
MGF.DLKSPAGL.VLNDYLADKSYIEGYVP.QADVAVFEAVSSP.P...C.AL.W..HI.S.EK.EKASL | |
Retrocopy | MGFRDLKSPAGLHVLNDYLADKSYIEGYVPPQADVAVFEAVSSPLPVNSCLALCW*SHINSHEK<EKASL |
Parental | PGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAK |
PGVKK.LGKYGPA.VEDTTGS.A..SKDDDDIDL.GSD.EEESE.AKRL.EE.LAQ.ES.K..K...... | |
Retrocopy | PGVKKPLGKYGPANVEDTTGSRAANSKDDDDIDLLGSDKEEESEAAKRLMEEWLAQNES-KKAKKHALVA |
Parental | SSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITA |
.....DVKPWDD..DMAKLEECVRSIQADGLV.GSSKL....YGI.KLQIQCV.EDDKVG.D.LEEQ.TA | |
Retrocopy | VFHHADVKPWDDVADMAKLEECVRSIQADGLV*GSSKLALMEYGI*KLQIQCVTEDDKVGADTLEEQVTA |
Parental | FEDYVQSMDVAAFNK |
FED.VQSMD.AAF.K | |
Retrocopy | FEDSVQSMDMAAFRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 67 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .56 RPM |
SRP007412_heart | 0 .00 RPM | 44 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 162 .00 RPM |
SRP007412_liver | 0 .03 RPM | 153 .78 RPM |
SRP007412_testis | 0 .00 RPM | 119 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2883 |
Pongo abelii | retro_pabe_2389 |
Macaca mulatta | retro_mmul_1456 |