RetrogeneDB ID: | retro_cfam_56 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 26:31062295..31062973(+) | ||
Located in intron of: | ENSCAFG00000015421 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000015433 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000029635 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.2 % |
Parental protein coverage: | 74.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YVPSQADVAVFEAVSGPPPADLYHALRWYNHIKSYEKEKASLPGVKKALGKYGPANVEDTTGSGATDSKD |
Y.PSQAD.AVFEAVS.P..A.LYHALRWYNHIKSYEKEKASLPGVKKALGKYGPANVEDTTGSGATDSKD | |
Retrocopy | YMPSQADMAVFEAVSSPRLANLYHALRWYNHIKSYEKEKASLPGVKKALGKYGPANVEDTTGSGATDSKD |
Parental | DDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQA |
DDDIDLFGS.DEEESE..KRLREER.AQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQA | |
Retrocopy | DDDIDLFGSNDEEESEKVKRLREERFAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQA |
Parental | DGLVWGS |
DGLVWGS | |
Retrocopy | DGLVWGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 11 .47 RPM | 173 .41 RPM |
SRP017611_brain | 5 .48 RPM | 68 .52 RPM |
SRP017611_kidney | 31 .70 RPM | 363 .20 RPM |
SRP017611_liver | 11 .67 RPM | 140 .17 RPM |