RetrogeneDB ID: | retro_vpac_111 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1861:911668..912438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSVPAG00000007368 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 79.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
PQNE...LHR.RYGYR.DYH.KKRKKEGREA..RSKKAKKMIGLKAKLYHKQRHAEKIQM.KTIKM..KR | |
Retrocopy | PQNECTVLHRERYGYRWDYHGKKRKKEGREAR-RSKKAKKMIGLKAKLYHKQRHAEKIQMEKTIKMCGKR |
Parental | NTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKR |
NTKQK.DEKTPQGAVPAYLLDREGQSRA.VLSNM..Q.RKE.AGKWEVPLP.VRAQGETEVL.V.RTG.R | |
Retrocopy | NTKQK-DEKTPQGAVPAYLLDREGQSRAQVLSNMSEQQRKETAGKWEVPLPRVRAQGETEVLTVTRTGNR |
Parental | KKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTSL |
KKKAWKRMVTKV.F.GDGFT.KPPKYERFIRPMGLRFKKA..THPELKATFCLPILGVK.NP.S..Y..L | |
Retrocopy | KKKAWKRMVTKVNFLGDGFTQKPPKYERFIRPMGLRFKKADLTHPELKATFCLPILGVKNNPVSSQYSDL |
Parental | GVITKGTVIEVNVS-ELGLVTQGGKVIWXXXXXXXXXXXXDGCINAVLLV |
GVITKGTVI.VNV..EL..VTQGGKVI..............GCI.AVL.V | |
Retrocopy | GVITKGTVIGVNVT<ELVFVTQGGKVI*GKYAQVTNNPENEGCIKAVLVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |