RetrogeneDB ID:

retro_ogar_3072

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873709.1:2048736..2049187(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000027997
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_3072
GGCAAGCCCTTTGGCTGTGTCTCCTTTGAGCTGCTTACAGACAAAGTCCCAAAGACAGCAGAAACTTTTGTGCTCTAAAC
ATTGGAGAGACAGAACTTAGTTATAAAGATTCCTGTTCTCACAGAATTATTCCAGGATGTATGTGCCTGGGTGGTGACTT
CACACACCATAATGGCACTAGCAACAAGTCCATTCATAGGGAAAATATTGATCATGAGAATTTCATCCTGAAGCTTATAG
GTCCTGCCATCTTGTCCATGGCAAATGCCAGACCCAATAAAAATGGCTCTCAGATTTTCATCCACACTGCTGAGACCACA
CAGCTGGATGGCAAGCATGTGGTCTTTGGCAAGGTGCAGGGGGGCATGAACATTACAGAAGCCAGGAAGCACTTGGGTCC
AGGAATGGCAAAACCAGCAAGAAGATCTAAATCACCAACTATGGGCAACTC

ORF - retro_ogar_3072 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.88 %
Parental protein coverage: 92.12 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGEPLGRVSFELFADKVPKTAAE-NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGE
G.P.G.VSFEL..DKVPKT.AE.NF.AL..GE....YK.SC.HRIIPG.MC.GGDFT.HNGT..KSI..E
RetrocopyGKPFGCVSFELLTDKVPKT-AE<NFCALNIGETELSYKDSCSHRIIPGCMCLGGDFTHHNGTSNKSIHRE
ParentalKFEDENFVLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVKEGMNVVEA-MERFGSKNG
....ENF.LK..GP.ILSMANA.PN.NGSQ.FI.T..T..LDGKHVVFGKV..GMN..EA..E..GS.NG
RetrocopyNIDHENFILKLIGPAILSMANARPNKNGSQIFIHTAETTQLDGKHVVFGKVQGGMNITEA<QEALGSRNG
ParentalKTSKKITITDCGQL
KTSKKI.IT..GQL
RetrocopyKTSKKI*ITNYGQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_3072 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 464 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000001200312 retrocopies
retro_btau_1005, retro_btau_1448, retro_btau_155, retro_btau_1696, retro_btau_1806, retro_btau_272, retro_btau_334, retro_btau_335, retro_btau_345, retro_btau_414, retro_btau_751, retro_btau_934,
Callithrix jacchus ENSCJAG0000001196954 retrocopies
retro_cjac_1065, retro_cjac_1080, retro_cjac_1083, retro_cjac_1092, retro_cjac_1097, retro_cjac_11, retro_cjac_1193, retro_cjac_1213, retro_cjac_1310, retro_cjac_1326, retro_cjac_1347, retro_cjac_1451, retro_cjac_147, retro_cjac_1678, retro_cjac_1710, retro_cjac_1760, retro_cjac_1782, retro_cjac_1982, retro_cjac_1989, retro_cjac_2043, retro_cjac_2060, retro_cjac_2062, retro_cjac_2118, retro_cjac_2286, retro_cjac_2327, retro_cjac_2376, retro_cjac_2425, retro_cjac_2426, retro_cjac_2479, retro_cjac_2540, retro_cjac_2688, retro_cjac_2863, retro_cjac_2881, retro_cjac_2977, retro_cjac_3073, retro_cjac_3077, retro_cjac_3101, retro_cjac_3196, retro_cjac_384, retro_cjac_4202, retro_cjac_4203, retro_cjac_501, retro_cjac_646, retro_cjac_649, retro_cjac_695, retro_cjac_704, retro_cjac_710, retro_cjac_714, retro_cjac_717, retro_cjac_755, retro_cjac_827, retro_cjac_834, retro_cjac_871, retro_cjac_971,
Cavia porcellus ENSCPOG0000000263211 retrocopies
retro_cpor_1152, retro_cpor_1284, retro_cpor_1395, retro_cpor_1493, retro_cpor_165, retro_cpor_192, retro_cpor_251, retro_cpor_372, retro_cpor_642, retro_cpor_902, retro_cpor_960,
Echinops telfairi ENSETEG0000000218621 retrocopies
retro_etel_115, retro_etel_1188, retro_etel_1292, retro_etel_1322, retro_etel_1670, retro_etel_1827, retro_etel_1875, retro_etel_1886, retro_etel_208, retro_etel_25, retro_etel_288, retro_etel_371, retro_etel_430, retro_etel_447, retro_etel_485, retro_etel_537, retro_etel_551, retro_etel_568, retro_etel_595, retro_etel_937, retro_etel_998,
Homo sapiens ENSG0000019626278 retrocopies
retro_hsap_1149, retro_hsap_1196, retro_hsap_1206, retro_hsap_1239, retro_hsap_1286, retro_hsap_1297, retro_hsap_1326, retro_hsap_1346, retro_hsap_1515, retro_hsap_1645, retro_hsap_1651, retro_hsap_1653, retro_hsap_1709, retro_hsap_1753, retro_hsap_1779, retro_hsap_1872, retro_hsap_1991, retro_hsap_2065, retro_hsap_2077, retro_hsap_2081, retro_hsap_2105, retro_hsap_2154, retro_hsap_2203, retro_hsap_2255, retro_hsap_2297, retro_hsap_2345, retro_hsap_242, retro_hsap_2426, retro_hsap_2429, retro_hsap_2464, retro_hsap_2497, retro_hsap_2518, retro_hsap_2641, retro_hsap_2652, retro_hsap_2717, retro_hsap_2727, retro_hsap_2788, retro_hsap_2789, retro_hsap_2792, retro_hsap_2794, retro_hsap_2826, retro_hsap_2843, retro_hsap_2886, retro_hsap_2978, retro_hsap_3184, retro_hsap_3310, retro_hsap_3348, retro_hsap_3351, retro_hsap_354, retro_hsap_3575, retro_hsap_375, retro_hsap_3751, retro_hsap_3781, retro_hsap_3835, retro_hsap_3880, retro_hsap_3916, retro_hsap_3960, retro_hsap_3966, retro_hsap_4035, retro_hsap_4128, retro_hsap_4274, retro_hsap_4285, retro_hsap_429, retro_hsap_4298, retro_hsap_4773, retro_hsap_4882, retro_hsap_527, retro_hsap_630, retro_hsap_649, retro_hsap_657, retro_hsap_694, retro_hsap_728, retro_hsap_733, retro_hsap_741, retro_hsap_774, retro_hsap_816, retro_hsap_839, retro_hsap_876,
Gorilla gorilla ENSGGOG000000262984 retrocopies
retro_ggor_138, retro_ggor_15, retro_ggor_165, retro_ggor_28,
Loxodonta africana ENSLAFG000000113451 retrocopy
retro_lafr_483,
Macropus eugenii ENSMEUG0000000201620 retrocopies
retro_meug_1024, retro_meug_1055, retro_meug_1089, retro_meug_1133, retro_meug_1269, retro_meug_1391, retro_meug_1576, retro_meug_1746, retro_meug_1880, retro_meug_1975, retro_meug_2013, retro_meug_2037, retro_meug_260, retro_meug_297, retro_meug_301, retro_meug_437, retro_meug_478, retro_meug_510, retro_meug_713, retro_meug_73,
Macaca mulatta ENSMMUG0000001663810 retrocopies
retro_mmul_1, retro_mmul_13, retro_mmul_132, retro_mmul_141, retro_mmul_161, retro_mmul_195, retro_mmul_245, retro_mmul_5, retro_mmul_56, retro_mmul_8,
Monodelphis domestica ENSMODG000000160899 retrocopies
retro_mdom_1373, retro_mdom_1524, retro_mdom_1856, retro_mdom_1884, retro_mdom_215, retro_mdom_272, retro_mdom_29, retro_mdom_730, retro_mdom_85,
Mus musculus ENSMUSG000000718662 retrocopies
retro_mmus_242, retro_mmus_285,
Oryctolagus cuniculus ENSOCUG000000166623 retrocopies
retro_ocun_113, retro_ocun_1406, retro_ocun_237,
Otolemur garnettii ENSOGAG00000027997 31 retrocopies
retro_ogar_1090, retro_ogar_1201, retro_ogar_1305, retro_ogar_1329, retro_ogar_1336, retro_ogar_1562, retro_ogar_1634, retro_ogar_1741, retro_ogar_1889, retro_ogar_1893, retro_ogar_1920, retro_ogar_1973, retro_ogar_1974, retro_ogar_1999, retro_ogar_21, retro_ogar_2246, retro_ogar_2265, retro_ogar_2397, retro_ogar_2401, retro_ogar_2440, retro_ogar_2484, retro_ogar_2794, retro_ogar_2907, retro_ogar_2924, retro_ogar_2938, retro_ogar_2948, retro_ogar_3072 , retro_ogar_3187, retro_ogar_3210, retro_ogar_357, retro_ogar_743,
Pongo abelii ENSPPYG0000001758612 retrocopies
retro_pabe_1065, retro_pabe_1330, retro_pabe_186, retro_pabe_221, retro_pabe_2267, retro_pabe_2469, retro_pabe_2633, retro_pabe_2730, retro_pabe_2812, retro_pabe_3474, retro_pabe_631, retro_pabe_995,
Pongo abelii ENSPPYG000000175874 retrocopies
retro_pabe_1118, retro_pabe_2202, retro_pabe_3311, retro_pabe_3602,
Pan troglodytes ENSPTRG0000002306477 retrocopies
retro_ptro_1116, retro_ptro_1122, retro_ptro_1124, retro_ptro_1213, retro_ptro_1277, retro_ptro_1328, retro_ptro_1377, retro_ptro_1399, retro_ptro_1401, retro_ptro_1423, retro_ptro_1449, retro_ptro_1463, retro_ptro_1529, retro_ptro_1531, retro_ptro_1544, retro_ptro_1596, retro_ptro_1626, retro_ptro_1639, retro_ptro_1672, retro_ptro_1717, retro_ptro_1779, retro_ptro_1787, retro_ptro_1835, retro_ptro_1843, retro_ptro_1889, retro_ptro_1890, retro_ptro_1891, retro_ptro_1916, retro_ptro_1925, retro_ptro_195, retro_ptro_1952, retro_ptro_2012, retro_ptro_2014, retro_ptro_210, retro_ptro_2136, retro_ptro_2138, retro_ptro_2161, retro_ptro_2260, retro_ptro_2272, retro_ptro_2425, retro_ptro_2546, retro_ptro_2562, retro_ptro_2611, retro_ptro_2642, retro_ptro_2663, retro_ptro_2689, retro_ptro_2692, retro_ptro_278, retro_ptro_2806, retro_ptro_2899, retro_ptro_2904, retro_ptro_2914, retro_ptro_293, retro_ptro_2945, retro_ptro_2967, retro_ptro_3010, retro_ptro_3033, retro_ptro_3049, retro_ptro_326, retro_ptro_394, retro_ptro_458, retro_ptro_472, retro_ptro_477, retro_ptro_498, retro_ptro_518, retro_ptro_521, retro_ptro_527, retro_ptro_541, retro_ptro_567, retro_ptro_585, retro_ptro_783, retro_ptro_825, retro_ptro_853, retro_ptro_879, retro_ptro_889, retro_ptro_905, retro_ptro_921,
Rattus norvegicus ENSRNOG000000064232 retrocopies
retro_rnor_360, retro_rnor_387,
Sarcophilus harrisii ENSSHAG000000170623 retrocopies
retro_shar_164, retro_shar_383, retro_shar_750,
Ictidomys tridecemlineatus ENSSTOG0000001021510 retrocopies
retro_itri_1073, retro_itri_1576, retro_itri_1683, retro_itri_1897, retro_itri_499, retro_itri_667, retro_itri_7, retro_itri_731, retro_itri_802, retro_itri_978,
Tupaia belangeri ENSTBEG0000001748477 retrocopies
retro_tbel_1014, retro_tbel_1098, retro_tbel_1104, retro_tbel_1106, retro_tbel_1180, retro_tbel_1661, retro_tbel_1689, retro_tbel_1808, retro_tbel_1813, retro_tbel_1831, retro_tbel_1895, retro_tbel_1904, retro_tbel_1913, retro_tbel_1918, retro_tbel_1936, retro_tbel_1938, retro_tbel_2013, retro_tbel_2014, retro_tbel_204, retro_tbel_2054, retro_tbel_2098, retro_tbel_2144, retro_tbel_2175, retro_tbel_221, retro_tbel_2557, retro_tbel_267, retro_tbel_2681, retro_tbel_2691, retro_tbel_2714, retro_tbel_2824, retro_tbel_2834, retro_tbel_2851, retro_tbel_2897, retro_tbel_2938, retro_tbel_3004, retro_tbel_3054, retro_tbel_3104, retro_tbel_3142, retro_tbel_3153, retro_tbel_3311, retro_tbel_3337, retro_tbel_3421, retro_tbel_3423, retro_tbel_3477, retro_tbel_3639, retro_tbel_3691, retro_tbel_3767, retro_tbel_3847, retro_tbel_3880, retro_tbel_3890, retro_tbel_3979, retro_tbel_4019, retro_tbel_415, retro_tbel_4155, retro_tbel_4325, retro_tbel_4332, retro_tbel_4364, retro_tbel_4391, retro_tbel_4534, retro_tbel_4537, retro_tbel_4568, retro_tbel_4581, retro_tbel_4683, retro_tbel_4699, retro_tbel_521, retro_tbel_541, retro_tbel_618, retro_tbel_64, retro_tbel_764, retro_tbel_80, retro_tbel_831, retro_tbel_832, retro_tbel_887, retro_tbel_900, retro_tbel_910, retro_tbel_922, retro_tbel_946,
Tarsius syrichta ENSTSYG0000000897323 retrocopies
retro_tsyr_1106, retro_tsyr_1266, retro_tsyr_1277, retro_tsyr_1530, retro_tsyr_1643, retro_tsyr_1816, retro_tsyr_1909, retro_tsyr_2040, retro_tsyr_2072, retro_tsyr_2097, retro_tsyr_388, retro_tsyr_400, retro_tsyr_408, retro_tsyr_430, retro_tsyr_459, retro_tsyr_478, retro_tsyr_481, retro_tsyr_507, retro_tsyr_641, retro_tsyr_705, retro_tsyr_760, retro_tsyr_847, retro_tsyr_924,


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