Parental gene:

ENSSTOG00000010215

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393288.1:19669674..19673334(+)


>ENSSTOG00000010215
ATGGTCAACCCCACCGTGTTCTTCGATATCGCCGTCGACGGCGAGCCCTTGGGCCGCGTCTCCTTCGAGTTGTTTGCAGA
CAAAGTTCCAAAAACAGCAGTAGAAAATTTTCGTGCTCTGAGTACTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCT
TTCACAGAATTATTCCAGGATTTATGTGCCAGGGTGGTGACTTCACACGCCATAATGGCACTGGCGGCAAGTCCATCTAC
GGGGAGAAGTTTGATGATGAGAACTTCATCCTAAAGCATACAGGCCCTGGCATTTTGTCTATGGCAAATGCTGGGCCAAA
CACAAACGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGTCTTTGGGAAGGTGA
AAGAGGGCATGAACATTGTGGAAGCCATGGAACGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTTCC
GACTGTGGACAACTCTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 ortholog_one2many 54 retrogenes
Cavia porcellus ENSCPOG00000002632 ortholog_one2one 11 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Loxodonta africana ENSLAFG00000011345 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Macaca mulatta ENSMMUG00000016638 possible_ortholog 10 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 possible_ortholog 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 possible_ortholog 12 retrogenes
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000023064 possible_ortholog 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Tupaia belangeri ENSTBEG00000017484 possible_ortholog 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_7 96.85 76.97
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2. retro_itri_499 62.96 65.45
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3. retro_itri_667 53.04 68.48
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4. retro_itri_731 65.91 79.39
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5. retro_itri_802 75.91 83.03
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6. retro_itri_978 81.05 57.58
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7. retro_itri_1073 81.99 97.58
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8. retro_itri_1576 59.46 64.85
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9. retro_itri_1683 53.73 78.79
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10. retro_itri_1897 54.76 75.76
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Download FASTA sequences of all ENSSTOG00000010215 retrocopies