RetrogeneDB ID:

retro_ggor_165

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:13:90050075..90050546(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000023664
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:PPIA
Ensembl ID:ENSGGOG00000026298
Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q0ZQL0]


Retrocopy-Parental alignment summary:






>retro_ggor_165
ATGGTCAACCCTACTGTGTTCTTCGACATCACCCTCGATGGCGAGCCCTTGGGCAGCGTCTCCTTCGAGCTGTTTGTAGA
CAAGTTTCCAAAGACAGAAGAAAACTTTCATCTTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAAAGTTCCTGCTTTC
ACAGAATTATTCCAGGGTTTATGTGTCGGGGTGATGACTTTACATGCCATAATAGCACTGGTGGCAAGTCCGTCTATGGG
GAGAAATTTGATGACGAGAACTTCGTCCTGAAGCATACAGATCCTGGCATCTTGTCCAGGGCAAATGCTGGACCCAGTAC
AAATGGTTCCCAGTTTTTTACCTGCACTGCTAAGACTGAGTGGTTCGACAAGGTGAAAGAACGCACGATTATTGTGGAGG
CCATGGGGCGCTTTGCGGGGAATGGGAAGACCAGCAAGAAGATCGCTGTTGCTGACTGTGGGCTACTCTAA

ORF - retro_ggor_165 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.93 %
Parental protein coverage: 74.55 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRH
MVNPTVFFDI..DGEPLG.VSFELF.DK.PKT.ENF..LSTGEKGFGYK.SCFHRIIPGFMC.G.DFT.H
RetrocopyMVNPTVFFDITLDGEPLGSVSFELFVDKFPKTEENFHLLSTGEKGFGYKSSCFHRIIPGFMCRGDDFTCH
ParentalNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLD
N.TGGKS.YGEKF.DENF.LKHT.PGILS.ANAGP.TNGSQFF.CTAKTEW.D
RetrocopyNSTGGKSVYGEKFDDENFVLKHTDPGILSRANAGPSTNGSQFFTCTAKTEWFD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 112 .84 RPM
SRP007412_cerebellum 0 .00 RPM 68 .91 RPM
SRP007412_heart 0 .00 RPM 19 .86 RPM
SRP007412_kidney 0 .00 RPM 93 .06 RPM
SRP007412_liver 0 .00 RPM 71 .27 RPM
SRP007412_testis 0 .00 RPM 53 .87 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_165 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_165 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1297
Pan troglodytes retro_ptro_889

Parental genes homology:
Parental genes homology involve 22 parental genes, and 465 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000001200312 retrocopies
Callithrix jacchus ENSCJAG0000001196954 retrocopies
Cavia porcellus ENSCPOG0000000263211 retrocopies
Echinops telfairi ENSETEG0000000218621 retrocopies
Homo sapiens ENSG0000019626278 retrocopies
Gorilla gorilla ENSGGOG00000026298 4 retrocopies
Gorilla gorilla ENSGGOG000000274421 retrocopy
Loxodonta africana ENSLAFG000000113451 retrocopy
Macropus eugenii ENSMEUG0000000201620 retrocopies
Macaca mulatta ENSMMUG0000001663810 retrocopies
Monodelphis domestica ENSMODG000000160899 retrocopies
Mus musculus ENSMUSG000000718662 retrocopies
Oryctolagus cuniculus ENSOCUG000000166623 retrocopies
Otolemur garnettii ENSOGAG0000002799731 retrocopies
Pongo abelii ENSPPYG0000001758612 retrocopies
Pongo abelii ENSPPYG000000175874 retrocopies
Pan troglodytes ENSPTRG0000002306477 retrocopies
Rattus norvegicus ENSRNOG000000064232 retrocopies
Sarcophilus harrisii ENSSHAG000000170623 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001021510 retrocopies
Tupaia belangeri ENSTBEG0000001748477 retrocopies
Tarsius syrichta ENSTSYG0000000897323 retrocopies



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