Parental gene:

ENSPPYG00000017587

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H2PM74]
Organism:Orangutan (Pongo abelii)
Coordinates:7:39284182..39286585(-)


>ENSPPYG00000017587
CAGCTGTTTGCAGATAAGGTCCCAAAGACAGCAGAAAATTTTCGTGCTCTGAGCACCGGAGAGAAAGGATTTGGTTATAA
GGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCATAATGGCACTGGTGGCA
AGTCCATCTATGGGGAGAAATTTGAAGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAAT
GCTGGACCCAACACAAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGTCTT
TGGCAAAGTGAAAGAAGGCATGAATATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGA
TCACCATTGCTGACTGTGGACAACTTGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 42 .30 RPM
SRP007412_cerebellum 29 .67 RPM
SRP007412_heart 9 .09 RPM
SRP007412_kidney 31 .72 RPM
SRP007412_liver 23 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Cavia porcellus ENSCPOG00000002632 possible_ortholog 11 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Loxodonta africana ENSLAFG00000011345 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Macaca mulatta ENSMMUG00000016638 possible_ortholog 10 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 ortholog_many2many 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 within_species_paralog 12 retrogenes
Pan troglodytes ENSPTRG00000023064 possible_ortholog 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 ortholog_many2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 ortholog_one2many 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1118 65.22 79.02
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2. retro_pabe_2202 82.17 89.51
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3. retro_pabe_3311 75.36 94.41
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4. retro_pabe_3602 93.86 79.02
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Download FASTA sequences of all ENSPPYG00000017587 retrocopies