RetrogeneDB ID:

retro_tsyr_847

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_216175:997..1404(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTSYG00000008973
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_tsyr_847
GACCCCCGCACAGAGACAGCAGAAAACTTTCATGCTCTGAGCACTGGAGAAAAACAATCTGGTTAGAAGCATTCCTGCTT
TCACAGAATTATTCCAGATGTTTTGTGCCAGGGTGGTGACTTCACATGTCATACTGGCACTGGCAAGTCAATCTATGGGG
AGAAATTTGATGCAAACTTCATCCTGAAGCACACGGTTCCTGGCATCTTGTCCATGGAAAATGCTGGACCCAACACAAAT
TGTTCCCAGTTTTTCGCATGCACTATTAAGACTGAATGATTGGATGTCAAGCATGTGGTCTTTGGCAAGGGGAAAGTGGG
CATGAATGTTGTACAAGCCATGGAGGACTTTGGCTCCAAGAATGGCAATTCCAACAAGAAGCTCACTATTGCCAATGTGG
ACAACTC

ORF - retro_tsyr_847 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.26 %
Parental protein coverage: 97.87 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalDKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPG
D....TAENF.ALSTGEK..G.K.SCFHRIIP...CQGGDFT.H.GTG.KSIYGEKFD..NFILKHT.PG
RetrocopyDPRTETAENFHALSTGEKQSG*KHSCFHRIIPDVLCQGGDFTCHTGTG-KSIYGEKFD-ANFILKHTVPG
ParentalILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVKEGMNVVQAMEGFGSKNGKTSKKITIAD-CGQL
ILSM.NAGPNTN.SQFF.CT.KTE.LD.KHVVFGK.K.GMNVVQAME.FGSKNG...KK.TIA..CGQL
RetrocopyILSMENAGPNTNCSQFFACTIKTE*LDVKHVVFGKGKVGMNVVQAMEDFGSKNGNSNKKLTIAN<CGQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_847 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 464 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000001200312 retrocopies
Callithrix jacchus ENSCJAG0000001196954 retrocopies
Cavia porcellus ENSCPOG0000000263211 retrocopies
Echinops telfairi ENSETEG0000000218621 retrocopies
Homo sapiens ENSG0000019626278 retrocopies
Gorilla gorilla ENSGGOG000000262984 retrocopies
Loxodonta africana ENSLAFG000000113451 retrocopy
Macropus eugenii ENSMEUG0000000201620 retrocopies
Macaca mulatta ENSMMUG0000001663810 retrocopies
Monodelphis domestica ENSMODG000000160899 retrocopies
Mus musculus ENSMUSG000000718662 retrocopies
Oryctolagus cuniculus ENSOCUG000000166623 retrocopies
Otolemur garnettii ENSOGAG0000002799731 retrocopies
Pongo abelii ENSPPYG0000001758612 retrocopies
Pongo abelii ENSPPYG000000175874 retrocopies
Pan troglodytes ENSPTRG0000002306477 retrocopies
Rattus norvegicus ENSRNOG000000064232 retrocopies
Sarcophilus harrisii ENSSHAG000000170623 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001021510 retrocopies
Tupaia belangeri ENSTBEG0000001748477 retrocopies
Tarsius syrichta ENSTSYG00000008973 23 retrocopies



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