Parental gene:

PPIA, ENSPPYG00000017586

Aliases:None
Description:peptidyl-prolyl cis-trans isomerase A [Source:RefSeq peptide;Acc:NP_001126060]
Organism:Orangutan (Pongo abelii)
Coordinates:7:39271874..39289540(-)


>ENSPPYG00000017586
ATGGGAAGACGCGCCTCATCGCTTGACAAAGGCCGAAGAGCTGCCGCGCTTCCGTCTCCCGCGTGCGCGCGCCATGCTGC
CCACCATCGTTCCGCACTGACCGTCCCCCGTGCCCCGCGTCCCGTACTGCCGCCCCGCCCCGAGTCCCATGCCGCAGCCA
CCGCGACGGAGCCCGCGGGCGGGAACCTGCCTCCGCGCGTTAGCGCGCACGCGCGCCTCCCGTGTCGTCCCCACCAACGC
CGGCTTCCGTCTATAAGCCAGATGCACTGTCACTCTGGCGAAGTAGCAGATGCGATTGGCCGGGACGGAGGCGCGAGACC
GGGTTGCGGGCGGGGCCGAACATGGTATAAAAGGGGCGGGAGGCCAGGCTCGTGCCGCTTTGCAGACGCCGCCGCCGAGG
AAAACCGCGTACTGTTAGCCATGGTCAACCCTACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCCTTGGGCCGCGTC
TCCTTTGAGCTGTTTGCAGATAAGGTCCCAAAGACAGCAGAAAATTTTCGTGCTCTGAGCACCGGAGAGAAAGGATTTGG
TTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCATAATGGCACTG
GTGGCAAGTCCATCTATGGGGAGAAATTTGAAGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATG
GCAAATGCTGGACCCAACACAAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGT
GCCTCTTATGAGCAAAGTGAAAGAAGGCATGAATATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCA
GCAAGAAGATCACCATTGCTGACTGTGGACAACTTGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 59 .44 RPM
SRP007412_cerebellum 20 .06 RPM
SRP007412_heart 9 .57 RPM
SRP007412_kidney 39 .21 RPM
SRP007412_liver 21 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Cavia porcellus ENSCPOG00000002632 possible_ortholog 11 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Loxodonta africana ENSLAFG00000011345 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Macaca mulatta ENSMMUG00000016638 ortholog_many2many 10 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 ortholog_many2many 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017587 within_species_paralog 4 retrogenes
Pan troglodytes ENSPTRG00000023064 ortholog_one2many 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 ortholog_many2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 ortholog_one2many 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_186 95.78 54.25
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2. retro_pabe_221 73.08 58.17
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3. retro_pabe_631 83.89 58.82
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4. retro_pabe_995 80.23 57.52
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5. retro_pabe_1065 82.32 58.82
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6. retro_pabe_1330 85.08 58.50
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7. retro_pabe_2267 81.56 58.50
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8. retro_pabe_2469 71.98 58.50
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9. retro_pabe_2633 82.58 58.17
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10. retro_pabe_2730 78.87 62.75
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11. retro_pabe_2812 86.52 58.17
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12. retro_pabe_3474 82.78 58.50
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Download FASTA sequences of all ENSPPYG00000017586 retrocopies