RetrogeneDB ID:

retro_mmus_242

Retrocopy
location
Organism:Mouse (Mus musculus)
Coordinates:9:96895657..96896152(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMUSG00000062933
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Ppia
Ensembl ID:ENSMUSG00000071866
Aliases:None
Description:peptidylprolyl isomerase A [Source:MGI Symbol;Acc:MGI:97749]


Retrocopy-Parental alignment summary:






>retro_mmus_242
ATGGTCAACCCCACCGTGTTCTTCGACATCACGGCCGATGACGAGCCCTTGGGCCGCGTCTCCTTCGAGCTGTTTGCAGA
CAAAGTTCCAAAGACAGCAGAAAACTTTCGAGCTCTGAGCACTGGAGAGAAAGGATTTGGCTATAAGGGTTCCTCCTTTC
ACAGAATTATTCCAGGATTCATGTGCCAGGGTGGTGACTTTACACGCCATAATGGCACTGGCGGCAGGTCCATCTACGGA
GAGAAATTTGAGGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACAC
AAACGGTTCCCAGTTTTTTATCTGCACTGCCAAGACTGAATGGCTGGATGGCAAGCATGTGGTCTTTGGGAAGGTGAAAG
AAGGCATGAACATTGTGGAAGCCATGGAGCGTTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTTCCGAC
TGTGGACAGCTCTAA

ORF - retro_mmus_242 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRH
MVNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRH
RetrocopyMVNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRH
ParentalNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVE
NGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVE
RetrocopyNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVE
ParentalAMERFGSRNGKTSKKITISDCGQL
AMERFGSRNGKTSKKITISDCGQL
RetrocopyAMERFGSRNGKTSKKITISDCGQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 136 .46 RPM
SRP007412_cerebellum 0 .00 RPM 62 .09 RPM
SRP007412_heart 0 .00 RPM 25 .46 RPM
SRP007412_kidney 0 .00 RPM 79 .48 RPM
SRP007412_liver 0 .00 RPM 71 .93 RPM
SRP007412_testis 0 .00 RPM 88 .32 RPM
RNA Polymerase II actvity near the 5' end of retro_mmus_242 was not detected
No EST(s) were mapped for retro_mmus_242 retrocopy.
No TSS is located nearby retro_mmus_242 retrocopy 5' end.
retro_mmus_242 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmus_242 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 21 parental genes, and 464 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000001200312 retrocopies
Callithrix jacchus ENSCJAG0000001196954 retrocopies
Cavia porcellus ENSCPOG0000000263211 retrocopies
Echinops telfairi ENSETEG0000000218621 retrocopies
Homo sapiens ENSG0000019626278 retrocopies
Gorilla gorilla ENSGGOG000000262984 retrocopies
Loxodonta africana ENSLAFG000000113451 retrocopy
Macropus eugenii ENSMEUG0000000201620 retrocopies
Macaca mulatta ENSMMUG0000001663810 retrocopies
Monodelphis domestica ENSMODG000000160899 retrocopies
Mus musculus ENSMUSG00000071866 2 retrocopies
retro_mmus_242 , retro_mmus_285,
Oryctolagus cuniculus ENSOCUG000000166623 retrocopies
Otolemur garnettii ENSOGAG0000002799731 retrocopies
Pongo abelii ENSPPYG0000001758612 retrocopies
Pongo abelii ENSPPYG000000175874 retrocopies
Pan troglodytes ENSPTRG0000002306477 retrocopies
Rattus norvegicus ENSRNOG000000064232 retrocopies
Sarcophilus harrisii ENSSHAG000000170623 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001021510 retrocopies
Tupaia belangeri ENSTBEG0000001748477 retrocopies
Tarsius syrichta ENSTSYG0000000897323 retrocopies



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