Parental gene:

ENSOCUG00000016662

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:G1TC44]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:10:45134906..45138325(+)


>ENSOCUG00000016662
ATGGTCAACCCCACCGTGTTCTTCGACATCGCCGTCGACGGCGAGCCGCTCTCATTTTTTCTCTTACAGCTATTTGCAGA
CAAAGTTCCAAAGACAGCAGAAAACTTCCGTGCTCTGAGCACCGGAGAGAAAGGATTCGGTTATAAGGGTTCCTGCTTTC
ACAGGATTATTCCAGGGTTTATGTGCCAGGGTGGTGACTTCACACGCCACAATGGCACCGGCGGCAAGTCCATCTATGGA
GAGAAGTTCGAGGATGAAAACTTCCTGCTGAAGCACACAGGTCCTGGCATCTTGTCCATGGCAAACGCTGGGCCCAACAC
AAACGGCTCCCAGTTCTTCATCTGCACTGCCAAGACTGAATGGTTGGATGGCAAGCATGTGGTCTTTGGCAGAGTGAAAG
AGGGCATGAGCATTGTGGAAGCCATGGAGCACTTTGGGTCCGAGAACGGCAAGACCAGCAAGAAGATCACCATTGCCAAC
TGTGGACAACTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 600 .50 RPM
SRP017611_kidney 696 .52 RPM
SRP017611_liver 142 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Cavia porcellus ENSCPOG00000002632 possible_ortholog 11 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Loxodonta africana ENSLAFG00000011345 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Macaca mulatta ENSMMUG00000016638 possible_ortholog 10 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 possible_ortholog 2 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 possible_ortholog 12 retrogenes
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000023064 possible_ortholog 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 possible_ortholog 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_113 78.95 69.51
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2. retro_ocun_237 93.29 100.00
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3. retro_ocun_1406 55.56 54.27
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Download FASTA sequences of all ENSOCUG00000016662 retrocopies