Parental gene:

HMGB2, ENSCPOG00000003552

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_36:19238759..19239983(+)


>ENSCPOG00000003552
ATGGGCAAGGGAGACCCCAACAAGCCGCGGGGCAAGATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGCGAGGAGCA
CAAGAAGAAGCACCCCGACTCCTCGGTCAACTTCGCCGAGTTCTCCAAGAAGTGCTCGGAGAGATGGAAGACTATGTCTG
CCAAGGAAAAGTCCAAGTTTGAAGATATGGCAAAGAGTGATAAAGCTCGCTATGACAGGGAGATGAAAAACTACGTTCCT
CCCAAAGGAGGTGATAAGAGAGGAAAGAAGAAAGATCCTAACGCTCCTAAAAGACCGCCATCTGCCTTCTTCCTGTTTTG
CTCTGAACATCGCCCAAAGATCAAAAGCGAACACCCAGGCCTGTCCATTGGAGACACTGCGAAAAAATTGGGTGAAATGT
GGTCTGAGCAGTCAGCCAAAGATAAACAACCATATGAACAAAAAGCAGCTAAGCTAAAGGAGAAATACGAAAAGGATATT
GCTGCATACCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAAGGGTCCTGGTAGGCCAACAGGCTCAAAGAAGAAGAATGA
ACCAGAAGATGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGATGAAGAA

Library Parental gene expression (RPM)
SRP017611_brain 6 .67 RPM
SRP017611_kidney 16 .96 RPM
SRP017611_liver 9 .10 RPM
SRP040447_lung 25 .90 RPM
SRP040447_skeletal_muscle 8 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015101 ortholog_one2one 1 retrogene
retro_btau_58,
Cavia porcellus ENSCPOG00000000601 within_species_paralog 2 retrogenes
retro_cpor_1432, retro_cpor_384,
Cavia porcellus ENSCPOG00000003985 other_paralog 1 retrogene
retro_cpor_69,
Dasypus novemcinctus ENSDNOG00000019440 possible_ortholog 4 retrogenes
retro_dnov_1142, retro_dnov_1457, retro_dnov_454, retro_dnov_532,
Erinaceus europaeus ENSEEUG00000012238 ortholog_one2one 8 retrogenes
retro_eeur_118, retro_eeur_223, retro_eeur_345, retro_eeur_49, retro_eeur_54, retro_eeur_661, retro_eeur_702, retro_eeur_86,
Echinops telfairi ENSETEG00000010379 possible_ortholog 3 retrogenes
retro_etel_1474, retro_etel_1841, retro_etel_2023,
Echinops telfairi ENSETEG00000016379 possible_ortholog 1 retrogene
retro_etel_414,
Felis catus ENSFCAG00000004218 possible_ortholog 2 retrogenes
retro_fcat_279, retro_fcat_52,
Homo sapiens ENSG00000164104 ortholog_one2one 1 retrogene
retro_hsap_3663,
Gorilla gorilla ENSGGOG00000015882 ortholog_one2one 1 retrogene
retro_ggor_2474,
Macropus eugenii ENSMEUG00000002256 ortholog_one2one 3 retrogenes
retro_meug_1920, retro_meug_1989, retro_meug_550,
Monodelphis domestica ENSMODG00000003527 ortholog_one2one 3 retrogenes
retro_mdom_1160, retro_mdom_1919, retro_mdom_69,
Nomascus leucogenys ENSNLEG00000006662 ortholog_one2one 3 retrogenes
retro_nleu_113, retro_nleu_517, retro_nleu_550,
Pongo abelii ENSPPYG00000015204 ortholog_one2one 3 retrogenes
retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pan troglodytes ENSPTRG00000016597 ortholog_one2one 3 retrogenes
retro_ptro_19, retro_ptro_2484, retro_ptro_2789,
Rattus norvegicus ENSRNOG00000013167 ortholog_one2many 2 retrogenes
retro_rnor_173, retro_rnor_54,
Tursiops truncatus ENSTTRG00000015650 ortholog_one2one 1 retrogene
retro_ttru_1640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_604 66.10 55.45
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2. retro_cpor_890 84.78 64.45
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3. retro_cpor_980 56.31 95.26
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4. retro_cpor_1100 77.17 86.26
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Download FASTA sequences of all ENSCPOG00000003552 retrocopies