Parental gene:

HMGB2, ENSPPYG00000015204

Aliases:None
Description:high mobility group box 2 [Source:HGNC Symbol;Acc:5000]
Organism:Orangutan (Pongo abelii)
Coordinates:4:180332136..180335169(-)


>ENSPPYG00000015204
ATGGGTAAAGGAGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGGGAAGAGCA
CAAGAAGAAACACCCGGACTCTTCTGTCAATTTCGCGGAATTCTCCAAGAAGTGTTCGGAGAGATGGAAGACCATGTCTG
CAAAGGAGAAGTCGAAGTTTGAAGATATGGCAAAAAGTGACAAAGCTCGCTATGATAGGGAGATGAAAAATTACGTTCCT
CCCAAAGGTGATAAGAAAGGGAAGAAAAAGGATCCCAATGCTCCTAAAAGGCCACCATCTGCCTTCTTCCTGTTTTGCTC
TGAACATCGCCCAAAGATCAAAAGTGAACACCCGGGCCTATCCATTGGGGATACTGCAAAGAAATTGGGTGAAATGTGGT
CTGAGCAGTCAGCCAAAGATAAACAACCATATGAACAGAAAGCAGCTAAGCTAAAGGAGAAATATGAAAAGGATATTGCT
GCATATCGTGCAAAGGGCAAAAGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCAAAGAAGAAGAACGAACC
AGAAGATGAGGAGGAGGAGGAGGAGGAAGAAGAAGATGAAGATGAGGAGGAAGAGGATGAAGATGAAGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .67 RPM
SRP007412_cerebellum 12 .40 RPM
SRP007412_heart 15 .08 RPM
SRP007412_kidney 17 .40 RPM
SRP007412_liver 22 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015101 ortholog_one2one 1 retrogene
retro_btau_58,
Callithrix jacchus ENSCJAG00000005112 ortholog_one2one 2 retrogenes
retro_cjac_2555, retro_cjac_832,
Cavia porcellus ENSCPOG00000003552 ortholog_one2one 4 retrogenes
retro_cpor_1100, retro_cpor_604, retro_cpor_890, retro_cpor_980,
Dasypus novemcinctus ENSDNOG00000019440 possible_ortholog 4 retrogenes
retro_dnov_1142, retro_dnov_1457, retro_dnov_454, retro_dnov_532,
Erinaceus europaeus ENSEEUG00000012238 ortholog_one2one 8 retrogenes
retro_eeur_118, retro_eeur_223, retro_eeur_345, retro_eeur_49, retro_eeur_54, retro_eeur_661, retro_eeur_702, retro_eeur_86,
Echinops telfairi ENSETEG00000010379 ortholog_one2many 3 retrogenes
retro_etel_1474, retro_etel_1841, retro_etel_2023,
Echinops telfairi ENSETEG00000016379 possible_ortholog 1 retrogene
retro_etel_414,
Felis catus ENSFCAG00000004218 ortholog_one2many 2 retrogenes
retro_fcat_279, retro_fcat_52,
Homo sapiens ENSG00000164104 ortholog_one2one 1 retrogene
retro_hsap_3663,
Gorilla gorilla ENSGGOG00000015882 ortholog_one2one 1 retrogene
retro_ggor_2474,
Loxodonta africana ENSLAFG00000010417 ortholog_one2one 3 retrogenes
retro_lafr_1096, retro_lafr_1142, retro_lafr_595,
Macropus eugenii ENSMEUG00000002256 ortholog_one2one 3 retrogenes
retro_meug_1920, retro_meug_1989, retro_meug_550,
Myotis lucifugus ENSMLUG00000026303 ortholog_one2one 4 retrogenes
retro_mluc_1113, retro_mluc_1381, retro_mluc_1726, retro_mluc_2011,
Monodelphis domestica ENSMODG00000003527 ortholog_one2one 3 retrogenes
retro_mdom_1160, retro_mdom_1919, retro_mdom_69,
Mustela putorius furo ENSMPUG00000001919 ortholog_one2one 9 retrogenes
retro_mputfur_1134, retro_mputfur_1167, retro_mputfur_1379, retro_mputfur_1475, retro_mputfur_1631, retro_mputfur_1633, retro_mputfur_1644, retro_mputfur_940, retro_mputfur_989,
Mus musculus ENSMUSG00000054717 ortholog_one2one 23 retrogenes
retro_mmus_1477, retro_mmus_1745, retro_mmus_1974, retro_mmus_1975, retro_mmus_2269, retro_mmus_2527, retro_mmus_2528, retro_mmus_2529, retro_mmus_2530, retro_mmus_2531, retro_mmus_2843, retro_mmus_2884, retro_mmus_3248, retro_mmus_3426, retro_mmus_461, retro_mmus_626, retro_mmus_642, retro_mmus_796, retro_mmus_861, retro_mmus_901, retro_mmus_902, retro_mmus_904, retro_mmus_905,
Nomascus leucogenys ENSNLEG00000006662 ortholog_one2one 3 retrogenes
retro_nleu_113, retro_nleu_517, retro_nleu_550,
Oryctolagus cuniculus ENSOCUG00000000074 ortholog_one2one 1 retrogene
retro_ocun_1829,
Otolemur garnettii ENSOGAG00000017149 ortholog_one2one 3 retrogenes
retro_ogar_3117, retro_ogar_3323, retro_ogar_3336,
Pongo abelii ENSPPYG00000005546 other_paralog 35 retrogenes
retro_pabe_1023, retro_pabe_1125, retro_pabe_1254, retro_pabe_1334, retro_pabe_1500, retro_pabe_159, retro_pabe_1724, retro_pabe_1831, retro_pabe_1973, retro_pabe_1997, retro_pabe_2070, retro_pabe_2089, retro_pabe_2194, retro_pabe_222, retro_pabe_2313, retro_pabe_2362, retro_pabe_2406, retro_pabe_2444, retro_pabe_264, retro_pabe_2732, retro_pabe_2751, retro_pabe_2752, retro_pabe_2777, retro_pabe_2953, retro_pabe_2966, retro_pabe_3008, retro_pabe_3365, retro_pabe_3523, retro_pabe_3684, retro_pabe_3757, retro_pabe_452, retro_pabe_511, retro_pabe_522, retro_pabe_761, retro_pabe_762,
Pongo abelii ENSPPYG00000020818 within_species_paralog 22 retrogenes
retro_pabe_1207, retro_pabe_1411, retro_pabe_1505, retro_pabe_1580, retro_pabe_1823, retro_pabe_1825, retro_pabe_1927, retro_pabe_2339, retro_pabe_2538, retro_pabe_2712, retro_pabe_2816, retro_pabe_3000, retro_pabe_3041, retro_pabe_3144, retro_pabe_3387, retro_pabe_3685, retro_pabe_3813, retro_pabe_410, retro_pabe_442, retro_pabe_560, retro_pabe_632, retro_pabe_784,
Pan troglodytes ENSPTRG00000016597 ortholog_one2one 3 retrogenes
retro_ptro_19, retro_ptro_2484, retro_ptro_2789,
Rattus norvegicus ENSRNOG00000013167 ortholog_one2many 2 retrogenes
retro_rnor_173, retro_rnor_54,
Ictidomys tridecemlineatus ENSSTOG00000023980 ortholog_one2one 2 retrogenes
retro_itri_1720, retro_itri_880,
Tursiops truncatus ENSTTRG00000015650 ortholog_one2one 1 retrogene
retro_ttru_1640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_297 59.89 83.33
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2. retro_pabe_3005 60.38 74.76
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3. retro_pabe_3380 56.99 86.67
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Download FASTA sequences of all ENSPPYG00000015204 retrocopies