RetrogeneDB ID: | retro_meug_1920 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold72422:19606..20209(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000003189 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSMEUG00000002256 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 53.73 % |
Parental protein coverage: | 95.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLAKGDKARYDREMKN |
KP....SSY..F...CR..HK...P....NF.EFSKKCSE.WKT.S..EKSK.E..A..DKARY..EMKN | |
Retrocopy | KPKVNLSSYVHFLLNCRNKHKEQQPNAYINFKEFSKKCSEKWKTISKHEKSKYEAIARLDKARYQKEMKN |
Parental | YVPPKGDKKGK--KKDPNAPKRPPSAFFLFCAEHRPKIKSEHPGLSIGDTAKKLGELWSEQSAKDKLPYE |
YVPP.G.KK.K..KKDP.APKRPPS.FFLF..EH..KIKSE.P..S....AK.LGE.WS..S..DK.PYE | |
Retrocopy | YVPPVGMKKRKRRKKDPKAPKRPPSSFFLFSREHYTKIKSENPQWSVVEVAKLLGEMWSKKSEQDKQPYE |
Parental | QKVAKLKEKYEKDIAAYRAK-GKGDAGKKGPGRP-TGSKKKNEPEEEEEEEDEEDEEEEDD |
.K.A.L..KY.....AYR...G.G...KKGPG........K.......E..DE.D.E.E.D | |
Retrocopy | EKAARLRAKYHQELTAYRVNHGQGSSRKKGPGTSGQHQNRKKSKSDKNEGYDESDSEGELD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |