Parental gene:

HMGB3, ENSCPOG00000000601

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_213:134151..135964(+)


>ENSCPOG00000000601
ATGGCTAAAGGGGACCCCAAGAAACCAAAGGGCAAGATGTCTGCGTACGCCTTCTTTGTGCAGACCTGCAGAGAGGAGCA
CAAGAAGAAGAACCCGGAGGTCCCTGTCAATTTTGCTGAATTTTCCAAGAAGTGCTCGGAGAGGTGGAAGACAATGTCCG
GGAAAGAGAAATCCAAGTTTGATGAAATGGCCAAAGCCGATAAAGTGCGCTATGACCGAGAGATGAAAGATTATGGACCC
GCCAAGGGAGGCAAGAAGAAAAAGGACCCCAATGCCCCCAAAAGACCACCGTCTGGATTTTTCCTGTTCTGCTCCGAATT
CCGCCCCAAGATCAAATCTACCAACCCCGGTATCTCCATTGGAGATGTGGCCAAAAAGCTGGGGGAGATGTGGAATAACC
TGAGTGATAGCGAAAAGCAGCCCTACATTACCAAGGCGGCCAAGCTGAAGGAGAAGTATGAGAAGGATGTCGCTGACTAT
AAGTCTAAAGGAAAATTTGACGGTGCGAAGGGTCCTGCTAAAGTTGCCCGGAAAAAG

Library Parental gene expression (RPM)
SRP017611_brain 5 .29 RPM
SRP017611_kidney 2 .30 RPM
SRP017611_liver 0 .57 RPM
SRP040447_lung 1 .01 RPM
SRP040447_skeletal_muscle 0 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_one2many 2 retrogenes
retro_btau_190, retro_btau_38,
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2one 2 retrogenes
retro_chof_1891, retro_chof_2010,
Cavia porcellus ENSCPOG00000003552 within_species_paralog 4 retrogenes
retro_cpor_1100, retro_cpor_604, retro_cpor_890, retro_cpor_980,
Cavia porcellus ENSCPOG00000003985 other_paralog 1 retrogene
retro_cpor_69,
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Microcebus murinus ENSMICG00000015668 ortholog_one2one 4 retrogenes
retro_mmur_564, retro_mmur_60, retro_mmur_853, retro_mmur_994,
Myotis lucifugus ENSMLUG00000010926 possible_ortholog 4 retrogenes
retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Monodelphis domestica ENSMODG00000005735 ortholog_one2one 7 retrogenes
retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo ENSMPUG00000011606 ortholog_one2many 2 retrogenes
retro_mputfur_138, retro_mputfur_26,
Oryctolagus cuniculus ENSOCUG00000005986 possible_ortholog 7 retrogenes
retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2one 1 retrogene
retro_pvam_356,
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2one 2 retrogenes
retro_shar_139, retro_shar_316,
Sus scrofa ENSSSCG00000012745 ortholog_one2many 3 retrogenes
retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Tupaia belangeri ENSTBEG00000003068 ortholog_one2one 18 retrogenes
retro_tbel_1002, retro_tbel_1230, retro_tbel_1579, retro_tbel_1700, retro_tbel_1819, retro_tbel_2543, retro_tbel_2730, retro_tbel_3261, retro_tbel_3476, retro_tbel_3623, retro_tbel_3781, retro_tbel_408, retro_tbel_410, retro_tbel_4203, retro_tbel_4209, retro_tbel_4299, retro_tbel_605, retro_tbel_698,
Tursiops truncatus ENSTTRG00000000205 ortholog_one2one 2 retrogenes
retro_ttru_1187, retro_ttru_372,
Vicugna pacos ENSVPAG00000000096 ortholog_one2one 2 retrogenes
retro_vpac_245, retro_vpac_434,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_384 54.92 67.04
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2. retro_cpor_1432 56.67 82.12
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Download FASTA sequences of all ENSCPOG00000000601 retrocopies