RetrogeneDB ID: | retro_mdom_1160 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:285490598..285490955(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSMODG00000003527 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 52.46 % |
Parental protein coverage: | 57.97 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGKGDPNKPRGKMSSYAFF-VQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLAKG-DK |
M.KGDP...RG..S.Y.FF..Q....EHKK...DS...F.EFS...SE..K.MSAK.KSKF..L.K...K | |
Retrocopy | MSKGDPKEHRGTKSFYVFF<LQIFWKEHKK-YLDSSIVFSEFSNISSEK*KIMSAK*KSKFDNLTKM>EK |
Parental | ARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCAEHRPKIKSEHPGL |
......MK.Y...KG.KKGKKKDPNAPKR.PS.FFL..A....KI.....GL | |
Retrocopy | SQ*KWYMKSYISLKGYKKGKKKDPNAPKRQPSTFFLIHAKNHLKINRRYSGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |