RetrogeneDB ID: | retro_pabe_297 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:136162552..136163058(+) | ||
Located in intron of: | ENSPPYG00000001153 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSPPYG00000015204 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 59.89 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSS-VNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA |
M.KGDP.KP.GK.S.Y.FFVQTCREEHKK..P..S.V.FAEFSKKCSERWKT.S.KE..K...M.K.DK. | |
Retrocopy | MAKGDPKKPEGKVSAYSFFVQTCREEHKK-NPEVS>VSFAEFSKKCSERWKTVSGKENPKCDEMTKADKV |
Parental | RYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEM-WSEQSA |
.Y...M....P....K.GKKKD....KRPPS.FFL.CSE..PKIKS..PG..I.D.AKKLGEM.W...S. | |
Retrocopy | CYAWKMNDCEPV---KRGKKKDLHVSKRPPSVFFLHCSEFHPKIKSTNPGIFIRDVAKKLGEM>WI-TSV |
Parental | KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGP |
..KQP...KA.KL.E.YEKD.A.....GKS..G.KGP | |
Retrocopy | SEKQPCITKAVKLREEYEKDVADFKSNGKS--GAKGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 11 .67 RPM |
SRP007412_cerebellum | 0 .61 RPM | 12 .40 RPM |
SRP007412_heart | 0 .27 RPM | 15 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .40 RPM |
SRP007412_liver | 0 .09 RPM | 22 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_422 |
Gorilla gorilla | retro_ggor_414 |
Macaca mulatta | retro_mmul_514 |