RetrogeneDB ID: | retro_meug_550 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold13475:24685..25001(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSMEUG00000002256 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 58.56 % |
Parental protein coverage: | 51.69 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | PNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSA-KEKSKFEDLAKGDKARYDRE |
P.KPRGKMSS.AFFVQ.C.EEHKK...D..VN..EF.KKCSE...TMSA.K.K.......K..K..Y.RE | |
Retrocopy | PKKPRGKMSSFAFFVQNC*EEHKK*S-DGSVN-SEFLKKCSEK*QTMSA>KRKENLR-MWKNSKFPYERE |
Parental | MKN-YVPPKGD-KKGKK-KDPNAPKRPPSAFFLFCAEHRPK |
MKN.Y.PPKG...K.KK.KD.N.PK..P.AFFLF...H..K | |
Retrocopy | MKN>YIPPKGE<NKPKKVKDLNVPKKSPLAFFLFYVIHKSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |