RetrogeneDB ID: | retro_cpor_1432 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_82:595527..595955(+) | ||
Located in intron of: | ENSCPOG00000006314 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSCPOG00000000601 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.67 % |
Parental protein coverage: | 82.12 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | EHKKKNPEVPVNF-AEFSKKCSERWKTMS-GKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAP |
E..KKN.EVPV...AE.SK...ER.K.M..GK..SK...MA.ADKV......K.Y...KGGKK...P..P | |
Retrocopy | EKHKKNQEVPVSL<AELSKHL-ER*KMMF>GKN-SKSHAMARADKVYSVQKIKHYRLEKGGKK*NNPTTP |
Parental | KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKD-VADYKS |
..P.S.F.L..S..RPKIKSTNPGI...DVAKKL.EM.NN.SDSEKQP.ITK....K.K.....V..YKS | |
Retrocopy | *KPLSAFLLLYSGLRPKIKSTNPGITTRDVAKKLCEM*NN*SDSEKQPFITKIE--KPKHKEE<VTNYKS |
Parental | KGKFDGAKGP |
KGKFDG.K.P | |
Retrocopy | KGKFDGSKDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 5 .29 RPM |
SRP017611_kidney | 0 .42 RPM | 2 .30 RPM |
SRP017611_liver | 0 .13 RPM | 0 .57 RPM |
SRP040447_lung | 0 .03 RPM | 1 .01 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .89 RPM |