RetrogeneDB ID: | retro_dnov_1142 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_15297:32331..32776(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000019440 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKK-KHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA |
M...DP.KP.GK..S.AFFVQ.CREEHKK.K.P..S.....FSKKCSERWKTMS.KE.S.F..MAK.DK. | |
Retrocopy | MANRDPKKPKGKLAS*AFFVQACREEHKK>KTP-RSLSILQFSKKCSERWKTMSGKENSDFDEMAKADKV |
Parental | RYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK |
R.DR.M..Y....G..KG.KKD...PKRP.S.FFLFCSE..PKI.S..PG.SI.D.AKKLGE.W...S.. | |
Retrocopy | RNDRDMQDY----GPAKGGKKD---PKRPLSGFFLFCSEFHPKIRSTNPGISIRDVAKKLGELWNNLSDS |
Parental | DKQPYEQKAAKLKEKYEK |
.KQPY..KAAKLK.KYEK | |
Retrocopy | EKQPYNNKAAKLK-KYEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .97 RPM | 46 .48 RPM |
SRP012922_cerebellum | 0 .69 RPM | 6 .32 RPM |
SRP012922_heart | 0 .00 RPM | 10 .67 RPM |
SRP012922_kidney | 0 .27 RPM | 23 .00 RPM |
SRP012922_liver | 0 .46 RPM | 22 .76 RPM |
SRP012922_lung | 0 .00 RPM | 61 .85 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .63 RPM |
SRP012922_spleen | 0 .57 RPM | 161 .96 RPM |