RetrogeneDB ID: | retro_cpor_384 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_14:14982993..14983351(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSCPOG00000000601 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.92 % |
Parental protein coverage: | 67.04 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAF-FVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV |
MAKGDPK.PK.KM..Y...F....RE...KKNPEVP..F.EFS.K..ER.K.MS...KSKF.E....DK. | |
Retrocopy | MAKGDPKRPKSKMTTYPA<FI*IHREKQQKKNPEVPGSFSEFSMKGFER*KAMSREQKSKFEELVNVDKI |
Parental | RYDREMKDYGPAKGGKKKKDPNAPK-RPPSGFFLFCSEFRPKIKSTNPGISI |
....EM..YGPAKGG.KK..P..PK.R.PSGFFLFCS...P....T.P..S. | |
Retrocopy | *CGQEMRIYGPAKGGIKK*GPIFPK<RSPSGFFLFCS*VHPETRFTSPVTSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 5 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .30 RPM |
SRP017611_liver | 0 .00 RPM | 0 .57 RPM |
SRP040447_lung | 0 .00 RPM | 1 .01 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .89 RPM |