Parental gene:

CBX3, ENSECAG00000012780

Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Horse (Equus caballus)
Coordinates:4:57379691..57388389(+)


>ENSECAG00000012780
ATGGCCTCCAATAAAACTACATTGCAGAAAATGGGAAAGAAACAAAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAGTATTTCCTCAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAA
AAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTTTATCTGACAGTGAGTCTGATGATAGCAAATCAAAGAAGAA
AAGAGATACTGCTGATAAACCAAGAGGCTTTGCCAGAGGTCTTGATCCTGAACGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCAAAAGAGGCAAATATGAAATGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 16 .29 RPM
SRP021940_cerebellum 12 .41 RPM
SRP021940_embryo 28 .13 RPM
SRP021940_placental_villous 12 .89 RPM
SRP021940_synovial_membrane 10 .60 RPM
SRP021940_testis 10 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002897 possible_ortholog 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 possible_ortholog 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Loxodonta africana ENSLAFG00000006907 ortholog_one2one 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Mus musculus ENSMUSG00000029836 possible_ortholog 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Procavia capensis ENSPCAG00000004904 ortholog_one2one 2 retrogenes
retro_pcap_108, retro_pcap_166,
Rattus norvegicus ENSRNOG00000011814 possible_ortholog 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,
Tarsius syrichta ENSTSYG00000008159 ortholog_one2one 6 retrogenes
retro_tsyr_1459, retro_tsyr_1545, retro_tsyr_1552, retro_tsyr_1645, retro_tsyr_203, retro_tsyr_583,
Tursiops truncatus ENSTTRG00000000711 ortholog_one2one 7 retrogenes
retro_ttru_1238, retro_ttru_1247, retro_ttru_1851, retro_ttru_294, retro_ttru_52, retro_ttru_591, retro_ttru_644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_784 60.75 99.45
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Download FASTA sequences of all ENSECAG00000012780 retrocopies