RetrogeneDB ID: | retro_cjac_2728 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:64306528..64306966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000007952 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66. % |
Parental protein coverage: | 78.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VVNGKVEYFLKWKGF-TDADNTWEPEENLDCPELIEAFLNSQKAGKE---KDG-TKRKSLSDSESDDSKS |
..NGK.E.FLKWKG..TDAD.TWEPE...DC.ELIE.FLNSQKAGK....K.G.T.RK.LSDSESDDSKS | |
Retrocopy | IANGKLEHFLKWKGL<TDADSTWEPEDYFDCLELIETFLNSQKAGKKNKNKTGDTRRKRLSDSESDDSKS |
Parental | KKKRD-AADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLT |
.KKRD..A.KPRGFARG.DPER.I.A..S.GE.MFL.....SDEADL..AK.A.....Q..IA.YEE.L. | |
Retrocopy | -KKRD>TACKPRGFARGHDPERKI-AKNSNGEWMFLLECECSDEADLLQAKDAKGTSHQMLIASYEE*LP |
Parental | WHSCPEDEAQ |
.HSC.EDEAQ | |
Retrocopy | *HSCLEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 39 .74 RPM |
SRP051959_heart | 0 .00 RPM | 30 .54 RPM |
SRP051959_kidney | 0 .00 RPM | 46 .92 RPM |
SRP051959_liver | 0 .00 RPM | 32 .19 RPM |
SRP051959_lung | 0 .00 RPM | 41 .09 RPM |
SRP051959_lymph_node | 0 .00 RPM | 47 .56 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 16 .42 RPM |
SRP051959_spleen | 0 .00 RPM | 40 .99 RPM |