RetrogeneDB ID: | retro_cfam_739 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:40381924..40382440(-) | ||
Located in intron of: | ENSCAFG00000006864 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000002897 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.06 % |
Parental protein coverage: | 92.9 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN |
M.KKQN..........E.E..VV.K.....V...GKVEY.LKWKG..D.DNT..PEEN.DCP..I..FL. | |
Retrocopy | MRKKQNKMTVEEMLQEEEEGYVV*KFPEH*VEK<GKVEYLLKWKGSSDEDNTQDPEENPDCPDIIAEFLQ |
Parental | SQK--AGKEKDG-TKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW-KD |
S.K...G.EK....K..S.S.......KSKKK......P.GFA.GL..E.IIGA.DS..EL.FLMKW.K. | |
Retrocopy | S*KTACGTEKNT<RKIDSDSENKEEN-KSKKKEE-SEEP*GFAQGLELEQIIGAMDSNAELVFLMKW>KK |
Parental | SDEADLVLAKEANMKCPQIV-IAFYEERLTWHS-CPED |
SDE.DLVLAKEAN.KCPQ...I.FY.ERLTWHS..PED | |
Retrocopy | SDEDDLVLAKEANVKCPQGI>ISFYDERLTWHSYLPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 42 .96 RPM |
SRP017611_brain | 0 .00 RPM | 20 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .31 RPM |
SRP017611_liver | 0 .00 RPM | 13 .41 RPM |