RetrogeneDB ID: | retro_cjac_2623 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 5:73734748..73735294(-) | ||
Located in intron of: | ENSCJAG00000014540 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023151 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000007952 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
MASNKTTLQKMGKKQNGKSKKVEEAE.EEFVVEKVLDR.VVNGKVEYFLKWKGFTDADNTWEPEENLDC. | |
Retrocopy | MASNKTTLQKMGKKQNGKSKKVEEAETEEFVVEKVLDRHVVNGKVEYFLKWKGFTDADNTWEPEENLDCL |
Parental | ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM |
ELIEAFLNSQKA.KEKDGTKRKSLSDSESDDSKSKKKRD.ADKPRGFARGLDPERIIGATD.SGELMFLM | |
Retrocopy | ELIEAFLNSQKADKEKDGTKRKSLSDSESDDSKSKKKRD-ADKPRGFARGLDPERIIGATDGSGELMFLM |
Parental | KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ | |
Retrocopy | KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .73 RPM | 39 .74 RPM |
SRP051959_heart | 0 .56 RPM | 30 .54 RPM |
SRP051959_kidney | 0 .69 RPM | 46 .92 RPM |
SRP051959_liver | 0 .43 RPM | 32 .19 RPM |
SRP051959_lung | 0 .83 RPM | 41 .09 RPM |
SRP051959_lymph_node | 0 .89 RPM | 47 .56 RPM |
SRP051959_skeletal_muscle | 0 .39 RPM | 16 .42 RPM |
SRP051959_spleen | 0 .63 RPM | 40 .99 RPM |