RetrogeneDB ID: | retro_mmus_77 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:58646687..58647239(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000059647 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx3 | ||
Ensembl ID: | ENSMUSG00000029836 | ||
Aliases: | Cbx3, HP1g, M32 | ||
Description: | chromobox 3 [Source:MGI Symbol;Acc:MGI:108515] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP | |
Retrocopy | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
Parental | ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM |
ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM | |
Retrocopy | ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM |
Parental | KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ | |
Retrocopy | KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .46 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .12 RPM |
SRP007412_heart | 0 .00 RPM | 4 .20 RPM |
SRP007412_kidney | 0 .04 RPM | 4 .54 RPM |
SRP007412_liver | 0 .00 RPM | 3 .36 RPM |
SRP007412_testis | 0 .46 RPM | 6 .13 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
AW229900 | 58646761 | 58646969 | 99.6 | 206 | 1 | 205 |