RetrogeneDB ID: | retro_cfam_1811 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:5634621..5635164(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000002897 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP | |
Retrocopy | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
Parental | ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKK-RDAADKPRGFARGLDPERIIGA-TDSSGELMF |
ELIEAFLNS.............SLSDSESDD..SK.K.RDAADKPRGFARGLDPERIIGA.TD.SGELMF | |
Retrocopy | ELIEAFLNSXXXXXXXXXXXXXSLSDSESDD--SKSK>RDAADKPRGFARGLDPERIIGA<TDRSGELMF |
Parental | LMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
LMK.KDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ | |
Retrocopy | LMK*KDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 13 .57 RPM | 42 .96 RPM |
SRP017611_brain | 1 .75 RPM | 20 .40 RPM |
SRP017611_kidney | 3 .83 RPM | 30 .31 RPM |
SRP017611_liver | 1 .38 RPM | 13 .41 RPM |