RetrogeneDB ID: | retro_cfam_1849 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:27308330..27308880(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000002897 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEY-FLKWKG-FTDADNTWEPEENLD |
MASNKTTLQK.GKKQNGKSKK..EAEPEEF.VEKVLD..VVNGKVEY.F....G..TDADNT.EPEENLD | |
Retrocopy | MASNKTTLQK-GKKQNGKSKKGGEAEPEEFMVEKVLDCHVVNGKVEYLFPEVEG>LTDADNT*EPEENLD |
Parental | CPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMF |
CPELIEAFLNSQKAGKEKD.TKRKSL.DSESDDSKSKKKR.AADKPRGFARGLDPE.IIGATDSSGELMF | |
Retrocopy | CPELIEAFLNSQKAGKEKDATKRKSLADSESDDSKSKKKRGAADKPRGFARGLDPE*IIGATDSSGELMF |
Parental | LMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
LMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ | |
Retrocopy | LMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .59 RPM | 42 .96 RPM |
SRP017611_brain | 0 .24 RPM | 20 .40 RPM |
SRP017611_kidney | 0 .26 RPM | 30 .31 RPM |
SRP017611_liver | 0 .29 RPM | 13 .41 RPM |