RetrogeneDB ID: | retro_cfam_1823 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:45642731..45643009(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000002897 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.72 % |
Parental protein coverage: | 50.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWK-DSDEADLVLAKEANMKC |
.SLSD.ESDDSK.KKKRDAADK.R.F...LDPE..IGATD.SGELMFLMK...DSDE.DLVLA.EA.MKC | |
Retrocopy | QSLSDGESDDSKLKKKRDAADKTRSFVKCLDPELVIGATDGSGELMFLMKMR>DSDEVDLVLAREAYMKC |
Parental | PQIVIA-FYEERLTWHSCPEDEAQ |
P.IVIA.FYEERLTWHSCPED.AQ | |
Retrocopy | P*IVIA>FYEERLTWHSCPEDKAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 42 .96 RPM |
SRP017611_brain | 0 .00 RPM | 20 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .31 RPM |
SRP017611_liver | 0 .00 RPM | 13 .41 RPM |