RetrogeneDB ID: | retro_fcat_514 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:19893430..19893776(+) | ||
Located in intron of: | ENSFCAG00000018279 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSFCAG00000006056 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 68.07 % |
Parental protein coverage: | 63.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGKKQNKKKVEEVLEEEEEEYV-VEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ |
.GKK..KKKVEEVLEE.E.E.V.V.KV....V.K.K...LLK.KG...EDNTWE.E.N.DCPDL.A.FLQ | |
Retrocopy | VGKKPIKKKVEEVLEEGE-EFV>V*KVPKHGVEKAK-GILLKCKGS*EEDNTWESEDNPDCPDLNAQFLQ |
Parental | SQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLE |
SQKT.H.TDKSE.GK.K.DS.SE.KG.E.KPKKKKEESEKP..FA.GLE | |
Retrocopy | SQKTVHGTDKSEEGKHKIDSGSENKG-ENKPKKKKEESEKPWDFASGLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .63 RPM |
SRP017611_liver | 0 .00 RPM | 3 .34 RPM |