RetrogeneDB ID: | retro_pabe_1615 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:3920498..3920915(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTL | ||
Ensembl ID: | ENSPPYG00000010223 | ||
Aliases: | None | ||
Description: | Ferritin light chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R538] |
Percent Identity: | 71.33 % |
Parental protein coverage: | 73.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MSSQIRQNYSTDVEAAVNSLVNMYLQASYT-YLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKM |
MSSQIRQNYST.VEAAVN.LV...L.ASYT..LSL.FYFD..DVA.EG...FF.ELA.EKR.G.E.LLKM | |
Retrocopy | MSSQIRQNYSTAVEAAVNRLVSLHLRASYT<LLSLRFYFDHHDVAPEGGGYFFHELAKEKRKGVEHLLKM |
Parental | QNQRGGRALFQDIKKPAEDE-WGKTPDAMKAAMA-LEKKLNQALLDLHALGSAHTDPHLCD-FLETHFLD |
QNQRGG.A.FQDI.KP..DE.WGKT..AM.AAMA.L.K.LNQ.LLDLH.LGS..TDPHLCD..LE.H..D | |
Retrocopy | QNQRGGPAVFQDIQKPGQDE>WGKTLEAMEAAMA>LGKNLNQGLLDLHVLGSTPTDPHLCD<LLESHPVD |
Parental | EEV |
EEV | |
Retrocopy | EEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 98 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 54 .48 RPM |
SRP007412_heart | 0 .00 RPM | 53 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 966 .76 RPM |
SRP007412_liver | 0 .00 RPM | 1042 .84 RPM |