RetrogeneDB ID: | retro_pabe_291 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:124306645..124307130(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTL | ||
Ensembl ID: | ENSPPYG00000010223 | ||
Aliases: | None | ||
Description: | Ferritin light chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R538] |
Percent Identity: | 62.8 % |
Parental protein coverage: | 86.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSSQIRQNYSTDVEAAVNSLVNMYLQASYTYL-SLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKM |
MSSQI.QNYST.VEA..N.LVN..L.ASY..L..LGFY..R..V.LEG..HF..ELAEEKR.G.ERLLKM | |
Retrocopy | MSSQIHQNYSTEVEATINHLVNLHLRASYI*L<RLGFYSHRENVSLEGMGHFV-ELAEEKRQGTERLLKM |
Parental | QNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSAHTDPHLCDFLETHFLDEEV |
Q.Q.G..ALF.DI...A.DE.G..P........LEKKLNQAL.DLH.L.S.HT..HL...LE.HFLD.E. | |
Retrocopy | QSQHGSCALFHDIHMRAQDEYG*NPGRHGSHRSLEKKLNQALSDLHTLRSTHTQSHLSCSLESHFLDKEE |
Parental | KLIKKMGDHLTNLHRLGGPEAGAG |
KL.KKM.DHLTNLHRL..PEA..G | |
Retrocopy | KLLKKMSDHLTNLHRLASPEARLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 98 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 54 .48 RPM |
SRP007412_heart | 0 .00 RPM | 53 .34 RPM |
SRP007412_kidney | 0 .07 RPM | 966 .76 RPM |
SRP007412_liver | 0 .03 RPM | 1042 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_431 |
Macaca mulatta | retro_mmul_518 |